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Job request: 327

Organisation:
The London School of Hygiene & Tropical Medicine
Workspace:
non-specific-immunity
ID:
tdd2k5dpjzny4wnp
View repo View project.yaml

This page shows the technical details of what happened when authorised researcher Daniel Grint requested one or more actions to be run against real patient data in the project, within a secure environment.

By cross-referencing the indicated Requested Actions with the Pipeline section below, you can infer what security level various outputs were written to. Outputs marked as highly_sensitive can never be viewed directly by a researcher; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

Jobs

  • Action:
    generate_cohort
    Status:
    Status: Succeeded
    Job identifier:
    kqgmlz2o6khvgh2y
  • Action:
    feasibility
    Status:
    Status: Succeeded
    Job identifier:
    fb67c6si7btsqgwx

Pipeline

Show project.yaml 
version: "3.0"

expectations:
  population_size: 10000

actions:
  generate_cohort:
    run: cohortextractor:latest generate_cohort --study-definition study_definition
    outputs:
      highly_sensitive:
        cohort: output/input.csv

  feasibility:
    run: stata-mp:latest analysis/00_Test_runs_and_feasibility.do
    needs: [generate_cohort]
    outputs:
      moderately_sensitive:
        log: logs/00_Test_runs_and_feasibility.log
        figure1: output/00_c_lrti_week.svg

  run_all:
    needs: [feasibility]
    # In order to be valid this action needs to define a run commmand and some
    # output. We don't really care what these are but the below does the trick.
    # In a future release of the platform, this special action won't need to be
    # defined at all.
    run: cohortextractor:latest --version
    outputs:
      moderately_sensitive:
        whatever: project.yaml

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:00:46

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job information

Status
Succeeded
Backend
TPP
Workspace
non-specific-immunity
Requested by
Daniel Grint
Branch
DG-Dev
Force run dependencies
No
Git commit hash
5d45a44
Requested actions
  • feasibility
  • generate_cohort

Code comparison

Compare the code used in this Job Request