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Job request: 2192

Organisation:
The London School of Hygiene & Tropical Medicine
Workspace:
risk-prediction
ID:
xeelfsi3lafnthet
View repo View project.yaml

This page shows the technical details of what happened when authorised researcher Elizabeth (Fizz) Williamson requested one or more actions to be run against real patient data in the project, within a secure environment.

By cross-referencing the indicated Requested Actions with the Pipeline section below, you can infer what security level various outputs were written to. Outputs marked as highly_sensitive can never be viewed directly by a researcher; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

Jobs

  • Action:
    flow_chart
    Status:
    Status: Succeeded
    Job identifier:
    i7evjyipor3r2kfp
  • Action:
    generate_flowchart
    Status:
    Status: Succeeded
    Job identifier:
    244du35bvxbfvs4l

Pipeline

Show project.yaml 
version: '3.0'

expectations:
  population_size: 50000

actions:


################
#  Flow chart  #
################

  flow_chart:
    run: cohortextractor:latest generate_cohort --study-definition study_definition_flow_chart
    outputs:
      highly_sensitive:
        cohort: output/input_flow_chart.csv

  generate_flowchart:
    run: stata-mp:latest analysis/0000_cr_flow_chart.do
    needs: [flow_chart]
    outputs:
      moderately_sensitive:
        cohort: output/0000_cr_flow_chart.log

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 01:08:36

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job information

Status
Succeeded
Backend
TPP
Workspace
risk-prediction
Requested by
Elizabeth (Fizz) Williamson
Branch
master
Force run dependencies
No
Git commit hash
381a4c4
Requested actions
  • run_all

Code comparison

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