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Job request: 4845

Organisation:
The London School of Hygiene & Tropical Medicine
Workspace:
sgtf-omi
ID:
yl4soc33v2sdy4w4
View repo View project.yaml

This page shows the technical details of what happened when authorised researcher Daniel Grint requested one or more actions to be run against real patient data in the project, within a secure environment.

By cross-referencing the indicated Requested Actions with the Pipeline section below, you can infer what security level various outputs were written to. Outputs marked as highly_sensitive can never be viewed directly by a researcher; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

Jobs

  • Action:
    anTAB1
    Status:
    Status: Succeeded
    Job identifier:
    zami4hh4kflmqoa4

Pipeline

Show project.yaml 
version: '3.0'

expectations:
  population_size: 10000

actions:

  generate_cohort:
    run: cohortextractor:latest generate_cohort --study-definition study_definition
    outputs:
      highly_sensitive:
        cohort: output/input.csv

  crMAIN:
    run: stata-mp:latest analysis/cr_main.do
    needs: [generate_cohort]
    outputs:
      moderately_sensitive:
        log: logs/cr_main.log
      highly_sensitive:
        data: output/main.dta
        
  anSUMM:
    run: stata-mp:latest analysis/an_summary.do
    needs: [crMAIN]
    outputs:
      moderately_sensitive:
        log: logs/an_summary.log
        figure1: output/sgtf_perc_region.svg
        figure2: output/sgtf_perc_region.pdf
        
  anTAB1:
    run: stata-mp:latest analysis/an_table1.do
    needs: [crMAIN]
    outputs:
      moderately_sensitive:
        log: logs/an_table1.log
        table1text: output/table1.txt
        table1xlsx: output/table1.xlsx
        figure1: output/time_ae_hist.svg
        figure2: output/date_ae_hist.svg
        figure3: output/date_ae_hist1.svg
        figure4: output/ae_hist.svg
        figure5: output/ae_kden.svg

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:01:01

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job information

Status
Succeeded
Backend
TPP
Workspace
sgtf-omi
Requested by
Daniel Grint
Branch
main
Force run dependencies
No
Git commit hash
534e609
Requested actions
  • anTAB1

Code comparison

Compare the code used in this Job Request