This page shows the technical details of what happened when authorised researcher Anna Schultze requested one or more actions to be run against real patient data in the Vaccine Characteristics project, within a secure environment.
By cross-referencing the indicated Requested Actions with the Pipeline section below, you can infer what
security level various outputs were written to. Outputs
highly_sensitive can never be viewed directly by a
researcher; they can only request that code runs against them. Outputs marked as
moderately_sensitive can be
viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as
moderately_sensitive can be requested for release to the public, via a controlled output review service.
Show Hide project.yaml
version: "3.0" expectations: population_size: 700000 actions: # PRIMARY ANALYSES generate_cohort: run: cohortextractor:latest generate_cohort --study-definition study_definition outputs: highly_sensitive: cohort: output/input.csv 00_data_management: run: stata-mp:latest analysis/00_data_management.do output/input.csv output/tempdata/temp_data needs: [generate_cohort] outputs: highly_sensitive: data: output/tempdata/temp_data.dta moderately_sensitive: log: output/logs/00_data_management.log 01_study_population: run: stata-mp:latest analysis/01_study_population.do output/tempdata/temp_data.dta output/tempdata/study_population output/tempdata/study_population.csv needs: [00_data_management] outputs: highly_sensitive: data: output/tempdata/study_population.dta csv: output/tempdata/study_population.csv moderately_sensitive: log: output/logs/01_study_population.log 02_baseline_characteristics: run: stata-mp:latest analysis/02_baseline_characteristics.do output/tempdata/study_population.dta output/tables/table1.txt needs: [01_study_population] outputs: moderately_sensitive: log: output/logs/02_baseline_characteristics.log table: output/tables/table1.txt 03_logistic_regression: run: stata-mp:latest analysis/03_logistic_regression.do output/tempdata/study_population.dta output/tables/table2.txt needs: [01_study_population] outputs: moderately_sensitive: log: output/logs/03_logistic_regression.log table: output/tables/table2.txt 04_plots_over_time: run: r:latest analysis/04_plots_over_time.R needs: [01_study_population] outputs: moderately_sensitive: table: output/plots/plot1.png
State is inferred from the related Jobs.
Timings set to UTC timezone.
- Runtime: 00:37:48