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Job request: 3692

Organisation:
NICE
Workspace:
post_covid_nice_compliance
ID:
ukavifm3fln2ex5w
View repo View project.yaml

This page shows the technical details of what happened when authorised researcher Robert Willans requested one or more actions to be run against real patient data in the project, within a secure environment.

By cross-referencing the indicated Requested Actions with the Pipeline section below, you can infer what security level various outputs were written to. Outputs marked as highly_sensitive can never be viewed directly by a researcher; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

Pipeline

Show project.yaml 
version: '3.0'

expectations:
  population_size: 10000

actions:

  generate_acute_cohort:
    run: cohortextractor:latest generate_cohort --study-definition study_definition_any_acute_covid_pri_care
    outputs:
      highly_sensitive:
        cohort: output/input_any_acute_covid_pri_care.csv
        
  generate_og_pc_cohort:
    run: cohortextractor:latest generate_cohort --study-definition study_definition_ongoing_post_covid
    outputs:
      highly_sensitive:
        cohort: output/input_ongoing_post_covid.csv

  describe:
    run: r:latest analysis/report.R
    needs: [generate_acute_cohort, generate_og_pc_cohort]
    outputs:
      moderately_sensitive:
        pc_counts: output/ratios.csv

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime:

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job information

Status
Failed 
JobRequestError: describe failed on a previous run and must be re-run
Backend
TPP
Workspace
post_covid_nice_compliance
Requested by
Robert Willans
Branch
master
Force run dependencies
No
Git commit hash
a62d2c2
Requested actions
  • run_all

Code comparison

Compare the code used in this Job Request