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Job request: 26488

Organisation:
University of Oxford
Workspace:
neurosurgeryreferralssdr
ID:
qtritki2bnxsphwu
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Carl Gustaf S Axelsson requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    generate_dataset
    Status:
    Succeeded
    Job identifier:
    cgkkxoij3ave6q4x
  • Action:
    describe_completeness
    Status:
    Succeeded
    Job identifier:
    zkz63ynxdpb234sl
  • Action:
    describe_linkage
    Status:
    Succeeded
    Job identifier:
    r6hndhblhals4y4l
  • Action:
    describe_temporal
    Status:
    Succeeded
    Job identifier:
    k2q5x4cpehe2d7e4
  • Action:
    describe_demographics
    Status:
    Succeeded
    Job identifier:
    rfk4c4bmnceegdar

Pipeline

Show project.yaml 
version: '4.0'

actions:

  generate_dataset:
    run: ehrql:v1 generate-dataset analysis/dataset_definition.py --output output/dataset.csv.gz
    outputs:
      highly_sensitive:
        dataset: output/dataset.csv.gz

  describe_completeness:
    run: python:latest python analysis/describe_completeness.py
    needs: [generate_dataset]
    outputs:
      moderately_sensitive:
        tables: output/completeness/*.csv
        charts: output/completeness/*.png

  describe_linkage:
    run: python:latest python analysis/describe_linkage.py
    needs: [generate_dataset]
    outputs:
      moderately_sensitive:
        tables: output/linkage/*.csv
        charts: output/linkage/*.png

  describe_temporal:
    run: python:latest python analysis/describe_temporal.py
    needs: [generate_dataset]
    outputs:
      moderately_sensitive:
        tables: output/temporal/*.csv
        charts: output/temporal/*.png

  describe_demographics:
    run: python:latest python analysis/describe_demographics.py
    needs: [generate_dataset]
    outputs:
      moderately_sensitive:
        tables: output/demographics/*.csv

Job statistics

Status Count Percentage
Pending 0 0%
Running 0 0%
Succeeded 5 100%
Failed 0 0%

5 / 5 (100%) complete

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:35:14

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Succeeded
Backend
TPP
Workspace
neurosurgeryreferralssdr
Requested by
Carl Gustaf S Axelsson
Branch
main
Force run dependencies
Yes
Git commit hash
85fb428
Requested actions
  • run_all

Code comparison

Compare the code used in this job request