Job request: 3600

View Repo View project.yaml

This page shows the technical details of what happened when authorised researcher Millie Green requested one or more actions to be run against real patient data in the Care Home Prescribing project, within a secure environment.

By cross-referencing the indicated Requested Actions with the Pipeline section below, you can infer what security level various outputs were written to. Outputs marked as highly_sensitive can never be viewed directly by a researcher; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

Jobs

ID Status Action
anxpaxbgwszk5pnt succeeded generate_study_population
w4dhvpc3kvcgoboa succeeded generate_study_population_ethnicity
hyu3fhu2ind25bex succeeded join_ethnicity
qqzgn65kkgpyxf6k succeeded generate_measures
ucgadd5m2iegr6bm failed describe

Pipeline

Show Hide project.yaml
version: '3.0'

expectations:
  population_size: 10000

actions:

  generate_study_population:
    run: cohortextractor:latest generate_cohort --index-date-range "2019-10-01 to 2020-09-01 by month" --study-definition study_definition
    outputs:
      highly_sensitive:
        cohort: output/input_*.csv


  generate_study_population_ethnicity:
    run: cohortextractor:latest generate_cohort --study-definition study_definition_ethnicity --output-dir=output
    outputs:
      highly_sensitive:     
        cohort: output/input_ethnicity.csv
        

  join_ethnicity:
    run: python:latest python analysis/join_ethnicity.py
    needs: [generate_study_population, generate_study_population_ethnicity]
    outputs:
      highly_sensitive:
        cohort: output/input*.csv
        
          ## Generate measures
  generate_measures:
      run: cohortextractor:latest generate_measures --study-definition study_definition --output-dir=output
      needs: [generate_study_population, join_ethnicity]
      outputs:
        moderately_sensitive:
          measure_csv: output/measure_*.csv
          
        
  describe:
    run: python:latest python analysis/descriptives.py
    needs: [generate_study_population, generate_measures]
    outputs:
      moderately_sensitive:
        cohort: output/*.html

State

State is inferred from the related Jobs.

Status: Failed

Timings

Timings set to UTC timezone.

  • Created:
  • Started:
  • Finished:
  • Runtime: 01:30:44

Config

  • Backend:
    TPP
  • Workspace:
    carehomeprescribing
  • Branch:
    main
  • Creator:
    acagreen17
  • Force run dependencies:
    False
  • Git Commit Hash:
    4613cb5
  • Requested actions:
    • generate_study_population
    • generate_study_population_ethnicity
    • join_ethnicity
    • generate_measures
    • describe