Job request: 424

View Repo View project.yaml

This page shows the technical details of what happened when authorised researcher Seb Bacon requested one or more actions to be run against real patient data in the Vaccine Eligibility project, within a secure environment.

By cross-referencing the indicated Requested Actions with the Pipeline section below, you can infer what security level various outputs were written to. Outputs marked as highly_sensitive can never be viewed directly by a researcher; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

Jobs

ID Status Action
pubj6gjc4pln5edo succeeded generate_report

Pipeline

Show Hide project.yaml
version: "3.0"

expectations:
  population_size: 10000

actions:
  generate_cohort:
    run: cohortextractor:latest generate_cohort --study-definition study_definition
    outputs:
      highly_sensitive:
        cohort: output/input.csv

  generate_report:
    run: python:latest python analysis/report.py output output
    needs: [generate_cohort]
    outputs:
      moderately_sensitive:
        report: output/descriptives.html

  run_notebook:
    run: jupyter:latest jupyter nbconvert /workspace/analysis/Study_Analysis.ipynb --execute --to html --output-dir=/workspace/output --ExecutePreprocessor.timeout=86400
    needs: [generate_cohort]
    outputs:
      moderately_sensitive:
        notebook: output/Study_Analysis.html
        csv1: output/PriorityCounts_NoWorkforce.csv
        csv2: output/PriorityCounts_WithWorkforce.csv
        csv3: output/clinExtrVuln_propensity.csv
        csv4: output/atRisk_propensity.csv
        png1: output/waterfall_age.png
        png2: output/waterfall_wf.png

State

State is inferred from the related Jobs.

Status: Succeeded

Timings

Timings set to UTC timezone.

  • Created:
  • Started:
  • Finished:
  • Runtime: 00:00:09

Config

  • Backend:
    TPP
  • Workspace:
    vaccine-eligibility
  • Branch:
    will-run
  • Creator:
    sebbacon
  • Force run dependencies:
    False
  • Git Commit Hash:
    0e5a970
  • Requested actions:
    • generate_report