Job request: 8400
- Workspace:
- deaths-at-home-during-covid-19
- ID:
- bme2k454mnekuw7a
This page shows the technical details of what happened when authorised researcher Eilís Keeble requested one or more actions to be run against real patient data in the project, within a secure environment.
By cross-referencing the indicated Requested Actions with the
Pipeline section below, you can infer what
security level
various outputs were written to. Outputs marked as
highly_sensitive
can never be viewed directly by a researcher; they can only
request that code runs against them. Outputs marked as
moderately_sensitive
can be viewed by an approved researcher by logging into a highly
secure environment. Only outputs marked as
moderately_sensitive
can be requested for release to the public, via a controlled
output review service.
Jobs
-
- Job identifier:
-
czuidovudqyglb6p
-
- Job identifier:
-
3nb3orryonyo4eyh
-
- Job identifier:
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2cnsaxfne5zopjhg
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- Job identifier:
-
l6zbpwtazbdrnin3
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- Job identifier:
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wx25ixjh5cdbczt6
Pipeline
Show project.yaml
version: '3.0'
expectations:
population_size: 10000
actions:
generate_study_population:
run: cohortextractor:latest generate_cohort --study-definition study_definition --output-format feather
outputs:
highly_sensitive:
cohort: output/input.feather
generate_report:
run: cohort-report:v3.0.0 output/input.feather
needs: [generate_study_population]
config:
output_path: output/cohort_reports_outputs
outputs:
moderately_sensitive:
report: output/cohort_reports_outputs/descriptives_input.html
report_charts: output/cohort_reports_outputs/*.png
describe_cohorts:
run: r:latest analysis/01_describe_cohorts.R
needs: [generate_study_population]
outputs:
moderately_sensitive:
deaths_data: output/describe_cohorts/overall_death_counts/deaths_data.csv
deaths_cohort: output/describe_cohorts/overall_death_counts/deaths_cohort.csv
deaths_quarter: output/describe_cohorts/overall_death_counts/deaths_quarter.csv
deaths_quarter_figure: output/describe_cohorts/overall_death_counts/deaths_quarter.png
deaths_data_pod: output/describe_cohorts/overall_death_counts/deaths_data_pod.csv
deaths_cohort_pod: output/describe_cohorts/overall_death_counts/deaths_cohort_pod*.csv
deaths_quarter_pod: output/describe_cohorts/overall_death_counts/deaths_quarter_pod.csv
deaths_pod_figures: output/describe_cohorts/overall_death_counts/deaths_pod_cohort*.png
deaths_quarter_characteristic: output/describe_cohorts/quarter_death_counts/deaths_quarter_*.csv
quarter_summary_table: output/describe_cohorts/quarter_summary_table.csv
quarter_pod_summary_table: output/describe_cohorts/quarter_pod_summary_table.csv
deaths_quarter_ons: output/describe_cohorts/ons_death_comparisons/deaths_ons_quarter*.csv
deaths_month_ons: output/describe_cohorts/ons_death_comparisons/deaths_ons_month*.csv
deaths_ons_plots: output/describe_cohorts/ons_death_comparisons/deaths_ons*.png
cohort_summary_table: output/describe_cohorts/cohorts_summary_table.csv
cohort_pod_summary_table: output/describe_cohorts/cohorts_pod_summary_table*.csv
death_ratios_cohort: output/describe_cohorts/death_ratios_cohort/death_ratio_cohort*.csv
death_ratios_pod_cohort: output/describe_cohorts/death_ratios_pod_cohort/death_ratio_pod_cohort*.csv
deaths_region_ethnicity: output/describe_cohorts/overall_death_counts/deaths_region*.csv
describe_service_use:
run: r:latest analysis/02_describe_service_use.R
needs: [generate_study_population]
outputs:
moderately_sensitive:
service_use_means: output/describe_service_use/service_use_mean*.csv
service_use_means_plots: output/describe_service_use/plots/service_use_mean*.pdf
gp_complete_service_use_means: output/describe_service_use/complete_gp_history/gp_service_use_mean*.csv
gp_complete_service_use_plots: output/describe_service_use/complete_gp_history/plots/gp_service_use_mean*.pdf
describe_service_use_home:
run: r:latest analysis/03_describe_service_use_home.R
needs: [generate_study_population]
outputs:
moderately_sensitive:
service_use_cohort: output/describe_service_use_home/service_use_cohort_home_*.csv
gp_complete_service_use_cohort: output/describe_service_use_home/complete_gp_history/gp_service_use_cohort_home_*.csv
service_use_quarter: output/describe_service_use_home/service_use_quart_home_*.csv
gp_complete_service_use_quarter: output/describe_service_use_home/complete_gp_history/gp_service_use_quart_home_*.csv
service_use_quarter_plots: output/describe_service_use_home/plots/service_use_quart_home_*.pdf
gp_complete_service_use_quarter_plots: output/describe_service_use_home/complete_gp_history/plots/gp_service_use_quart_home_*.pdf
Timeline
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Created:
-
Started:
-
Finished:
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Runtime: 02:06:10
These timestamps are generated and stored using the UTC timezone on the backend.
Job information
- Status
-
Succeeded
- Backend
- TPP
- Workspace
- deaths-at-home-during-covid-19
- Requested by
- Eilís Keeble
- Branch
- main
- Force run dependencies
- Yes
- Git commit hash
- 6f308a9
- Requested actions
-
-
generate_study_population
-
generate_report
-
describe_cohorts
-
describe_service_use
-
describe_service_use_home
-