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Job request: 25494

Organisation:
University of Manchester
Workspace:
openpregnosis_main
ID:
jdhakzw5pqapehzx
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Paolo Mazzone requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    generate_hes_diagnostic_event_counts
    Status:
    Succeeded
    Job identifier:
    st6i7et256l6fcxw
  • Action:
    generate_diagnostic_event_counts
    Status:
    Succeeded
    Job identifier:
    ojr7bsuu2x7qdksq
  • Action:
    export_codelists_for_r
    Status:
    Succeeded
    Job identifier:
    3swn34l2sec2je35
  • Action:
    analyze_hes_diagnostic_event_counts
    Status:
    Succeeded
    Job identifier:
    224vvk3kwsuz7nya
  • Action:
    generate_hes_early_loss_data
    Status:
    Succeeded
    Job identifier:
    uk6gs7j3yjif2x77
  • Action:
    generate_hes_stillbirth_data
    Status:
    Succeeded
    Job identifier:
    cf2637l7xv7ifplt
  • Action:
    generate_hes_livebirth_data
    Status:
    Succeeded
    Job identifier:
    iannwezwmfm4y5bx
  • Action:
    convert_hes_stillbirth_episodes
    Status:
    Succeeded
    Job identifier:
    a2v4rbyuosclwoyh
  • Action:
    analyze_diagnostic_event_counts
    Status:
    Succeeded
    Job identifier:
    727o4obapmmldn7i
  • Action:
    convert_hes_blighted_ovum_episodes
    Status:
    Succeeded
    Job identifier:
    izrkezkqdgysxtbz
  • Action:
    convert_hes_ectopic_episodes
    Status:
    Succeeded
    Job identifier:
    lqsktnla57jn2bjj
  • Action:
    convert_hes_livebirth_episodes
    Status:
    Succeeded
    Job identifier:
    vatg5lhnam2hfzki
  • Action:
    convert_hes_fetal_death_episodes
    Status:
    Succeeded
    Job identifier:
    25hkrx6cp7hvgza6
  • Action:
    convert_hes_miscarriage_episodes
    Status:
    Succeeded
    Job identifier:
    qhjgbct2zriisd6u
  • Action:
    convert_hes_molar_episodes
    Status:
    Succeeded
    Job identifier:
    6i56wv4apbitp5pg
  • Action:
    generate_early_loss_data
    Status:
    Succeeded
    Job identifier:
    jytcr46wspgck7kk
  • Action:
    generate_early_markers_data
    Status:
    Succeeded
    Job identifier:
    lo7eijy53oyifhr7
  • Action:
    generate_indicator_data
    Status:
    Failed
    Job identifier:
    ioqcrew3723j4un5
    Error:
    nonzero_exit: Job exited with an error: Something went wrong with the database, please contact tech support
  • Action:
    generate_livebirth_data
    Status:
    Succeeded
    Job identifier:
    efevcgtmnrv2utcb
  • Action:
    generate_stillbirth_data
    Status:
    Succeeded
    Job identifier:
    sv6z5d5xcxyvvczr
  • Action:
    algorithm_step_1_hes
    Status:
    Succeeded
    Job identifier:
    36dzm4eikyn5kzct
  • Action:
    convert_multiple_delivery_live_and_still_stillbirth_view
    Status:
    Succeeded
    Job identifier:
    f3psihr7rbkbrpdn
  • Action:
    convert_single_delivery_stillbirth
    Status:
    Succeeded
    Job identifier:
    xq6ciadui6wpiett
  • Action:
    convert_multiple_delivery_still
    Status:
    Succeeded
    Job identifier:
    vsttdktgzlotospe
  • Action:
    algorithm_step_2a_hes
    Status:
    Succeeded
    Job identifier:
    yoj6ud5qrascv3ao
  • Action:
    convert_blighted_ovum_episodes
    Status:
    Succeeded
    Job identifier:
    phnnlfc5ywbczucm
  • Action:
    convert_ectopic_episodes
    Status:
    Succeeded
    Job identifier:
    lauxoscbmywtuxws
  • Action:
    convert_miscarriage_episodes
    Status:
    Succeeded
    Job identifier:
    hodmzhbwjduvnh4w
  • Action:
    convert_multiple_delivery_live
    Status:
    Succeeded
    Job identifier:
    zsk2kpd7kjhhu7pe
  • Action:
    convert_molar_episodes
    Status:
    Succeeded
    Job identifier:
    sm3wxnxkk3lvhiva
  • Action:
    convert_single_delivery_livebirth
    Status:
    Succeeded
    Job identifier:
    r34rit3jh3gpl5um
  • Action:
    convert_multiple_delivery_live_and_still_live_view
    Status:
    Succeeded
    Job identifier:
    rlt2lge6xzn3rrvj
  • Action:
    algorithm_step_2b_hes
    Status:
    Succeeded
    Job identifier:
    gcu2ethajnp7t53i
  • Action:
    convert_antenatal_ga_window
    Status:
    Succeeded
    Job identifier:
    k4bogmnljj53twyj
  • Action:
    convert_antenatal_ga_timed
    Status:
    Succeeded
    Job identifier:
    nvculam57u7khzl3
  • Action:
    convert_birth_ga_window
    Status:
    Succeeded
    Job identifier:
    xkq7fxvlj2gplpud
  • Action:
    convert_birth_ga_timed
    Status:
    Succeeded
    Job identifier:
    xp6l3eoymslzyhhb
  • Action:
    convert_edd_episodes
    Status:
    Succeeded
    Job identifier:
    d44stpgrtxdgcf4w
  • Action:
    convert_edc_episodes
    Status:
    Succeeded
    Job identifier:
    irpn4fcppezhcguw
  • Action:
    convert_lmp_episodes
    Status:
    Succeeded
    Job identifier:
    dr3oqviucqbwuyev
  • Action:
    archive_moderate_outputs
    Status:
    Failed
    Job identifier:
    3wl2zmpjhbaf6ro6
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    algorithm_step_4
    Status:
    Failed
    Job identifier:
    zx6tggck5t26ispp
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    convert_labour_birth_delivery_indicator
    Status:
    Failed
    Job identifier:
    bcviets3xalxij6m
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    algorithm_step_3d
    Status:
    Failed
    Job identifier:
    h7yn5ce57tkjrwnx
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    compare_pc_hes_episodes
    Status:
    Failed
    Job identifier:
    uvx6n6zrdnh324ac
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    algorithm_step_3c
    Status:
    Failed
    Job identifier:
    irazgodtkhcahji5
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    algorithm_step_3b
    Status:
    Failed
    Job identifier:
    sgstrwib32yjvxek
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    convert_multiple_gestation
    Status:
    Failed
    Job identifier:
    rllfdkycvbzqm75m
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    convert_postnatal_complication_indicator
    Status:
    Failed
    Job identifier:
    plmlk3k7od5myx3z
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    algorithm_step_3a
    Status:
    Failed
    Job identifier:
    rnqrk5x7zgenlz5f
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    algorithm_step_2e
    Status:
    Failed
    Job identifier:
    22smr47jlns37g6w
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    algorithm_step_2d
    Status:
    Failed
    Job identifier:
    iz3fdcto4lb5ua7y
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    convert_antenatal_complication_indicator
    Status:
    Failed
    Job identifier:
    yujthcqi4aopop34
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    algorithm_step_2b
    Status:
    Failed
    Job identifier:
    d2q6azop7edowhjh
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    algorithm_step_2a
    Status:
    Failed
    Job identifier:
    t5pwcc4mhfathjhs
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    algorithm_step_1
    Status:
    Failed
    Job identifier:
    rytdxo2b6qiwnrvi
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    check_03_column_coverage
    Status:
    Failed
    Job identifier:
    kaq4qiuvml7pha4v
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    convert_early_preg_loss_indicator
    Status:
    Failed
    Job identifier:
    sbmzsw6e7rplq7q2
    Error:
    dependency_failed: Not starting as dependency failed

Pipeline

Show project.yaml
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Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 03:14:04

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
openpregnosis_main
Requested by
Paolo Mazzone
Branch
main
Force run dependencies
Yes
Git commit hash
477a92c
Requested actions
  • generate_diagnostic_event_counts
  • analyze_diagnostic_event_counts
  • generate_livebirth_data
  • generate_stillbirth_data
  • generate_early_loss_data
  • generate_early_markers_data
  • generate_indicator_data
  • export_codelists_for_r
  • convert_single_delivery_stillbirth
  • convert_multiple_delivery_still
  • convert_multiple_delivery_live_and_still_stillbirth_view
  • convert_single_delivery_livebirth
  • convert_multiple_delivery_live
  • convert_multiple_delivery_live_and_still_live_view
  • convert_miscarriage_episodes
  • convert_ectopic_episodes
  • convert_blighted_ovum_episodes
  • convert_molar_episodes
  • convert_lmp_episodes
  • convert_edd_episodes
  • convert_edc_episodes
  • convert_antenatal_ga_timed
  • convert_antenatal_ga_window
  • convert_birth_ga_timed
  • convert_birth_ga_window
  • convert_multiple_gestation
  • convert_antenatal_complication_indicator
  • convert_early_preg_loss_indicator
  • convert_labour_birth_delivery_indicator
  • convert_postnatal_complication_indicator
  • algorithm_step_1
  • algorithm_step_2a
  • algorithm_step_2b
  • algorithm_step_2d
  • algorithm_step_2e
  • algorithm_step_3a
  • algorithm_step_3b
  • algorithm_step_3c
  • algorithm_step_3d
  • algorithm_step_4
  • generate_hes_diagnostic_event_counts
  • analyze_hes_diagnostic_event_counts
  • generate_hes_livebirth_data
  • generate_hes_stillbirth_data
  • generate_hes_early_loss_data
  • convert_hes_livebirth_episodes
  • convert_hes_stillbirth_episodes
  • convert_hes_miscarriage_episodes
  • convert_hes_ectopic_episodes
  • convert_hes_blighted_ovum_episodes
  • convert_hes_molar_episodes
  • convert_hes_fetal_death_episodes
  • algorithm_step_1_hes
  • algorithm_step_2a_hes
  • algorithm_step_2b_hes
  • compare_pc_hes_episodes
  • archive_moderate_outputs
  • check_03_column_coverage

Code comparison

Compare the code used in this job request