Skip to content

Job request: 26854

Organisation:
University of Manchester
Workspace:
openpregnosis_longitudinal_main
ID:
fqbvqyiumjaz47du
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Paolo Mazzone requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    generate_diagnostic_event_counts
    Status:
    Succeeded
    Job identifier:
    vkef2p6xylha2zoe
  • Action:
    analyse_chronic_conditions_pc_diagnostic
    Status:
    Succeeded
    Job identifier:
    wt344kzldl46z3y3
  • Action:
    export_codelists_for_r
    Status:
    Succeeded
    Job identifier:
    hm4fa6uugx2ql4op
  • Action:
    generate_asthma_pc_data_2009_2013
    Status:
    Succeeded
    Job identifier:
    bofdtlw724qijo2v
  • Action:
    analyze_diagnostic_event_counts
    Status:
    Succeeded
    Job identifier:
    qw6dquwdmcofdbzi
  • Action:
    generate_early_markers_data_2009_2013
    Status:
    Succeeded
    Job identifier:
    ylho73vmy4yc2dlh
  • Action:
    generate_early_markers_data_2014_2018
    Status:
    Succeeded
    Job identifier:
    oqj5b6effn6on3te
  • Action:
    generate_early_markers_data_2019_2026
    Status:
    Succeeded
    Job identifier:
    jufvhs5n5fxzhsxo
  • Action:
    generate_early_ga_numeric_markers_data_2009_2013
    Status:
    Succeeded
    Job identifier:
    qxmnkcw5czo3r2qe
  • Action:
    convert_edc_episodes
    Status:
    Succeeded
    Job identifier:
    yfmprdk7conytbmw
  • Action:
    convert_edd_episodes
    Status:
    Succeeded
    Job identifier:
    c3ybyellojf5fxf7
  • Action:
    convert_lmp_episodes
    Status:
    Succeeded
    Job identifier:
    cafuz5pg2xdlw2ac
  • Action:
    generate_early_ga_numeric_markers_data_2014_2018
    Status:
    Succeeded
    Job identifier:
    gjfrau6fibt2g7sr
  • Action:
    dating_numeric_value_profiling_sdr
    Status:
    Failed
    Job identifier:
    j76unm6vhitqgyd3
    Status message:
    nonzero_exit: Job exited with an error
  • Action:
    generate_early_ga_numeric_markers_data_2019_2026
    Status:
    Succeeded
    Job identifier:
    75cjjd2ih5i6elp7
  • Action:
    generate_asthma_pc_data_2014_2018
    Status:
    Succeeded
    Job identifier:
    et4enpaqfvfhwb7d
  • Action:
    convert_antenatal_ga_timed
    Status:
    Succeeded
    Job identifier:
    zou4tt7t2hovvvas
  • Action:
    convert_antenatal_ga_window
    Status:
    Succeeded
    Job identifier:
    jnhqvqa3b4ebmoa2
  • Action:
    convert_birth_ga_timed
    Status:
    Succeeded
    Job identifier:
    x35xteqbruqujcf3
  • Action:
    convert_birth_ga_window
    Status:
    Succeeded
    Job identifier:
    slr353uqfhr2h6ac
  • Action:
    convert_ga_numeric_fallback
    Status:
    Succeeded
    Job identifier:
    nsotij55gorz3zpg
  • Action:
    same_day_event_analysis
    Status:
    Succeeded
    Job identifier:
    jt5tm37rvf2xjb3o
  • Action:
    generate_asthma_pc_data_2019_2026
    Status:
    Succeeded
    Job identifier:
    e3srd6dvmkmyrzkh
  • Action:
    algorithm_step_1_pc_hes
    Status:
    Succeeded
    Job identifier:
    sjfycw57nunuljdd
  • Action:
    algorithm_step_1
    Status:
    Succeeded
    Job identifier:
    6hyvew3ndrwohg25
  • Action:
    numeric_value_profiling_sdr
    Status:
    Succeeded
    Job identifier:
    kbtke7m5imyjg53m
  • Action:
    algorithm_step_2a
    Status:
    Succeeded
    Job identifier:
    za7hsleyzdderhd2
  • Action:
    algorithm_step_2a_pc_hes
    Status:
    Succeeded
    Job identifier:
    zbu2su6ccbx7tmks
  • Action:
    algorithm_step_2b
    Status:
    Succeeded
    Job identifier:
    4tubyj4dl7nldl66
  • Action:
    algorithm_step_2b_pc_hes
    Status:
    Succeeded
    Job identifier:
    e6c2kxj6lh5xbmof
  • Action:
    algorithm_step_2b_cluster_start_analysis
    Status:
    Succeeded
    Job identifier:
    fmz6guwjmf5ev2vx
  • Action:
    algorithm_step_2b_comparison
    Status:
    Succeeded
    Job identifier:
    pyclagu4s4caboj4
  • Action:
    algorithm_step_2b_impact_analysis
    Status:
    Succeeded
    Job identifier:
    5bajddpk2hcinp7h
  • Action:
    algorithm_step_2d
    Status:
    Succeeded
    Job identifier:
    ee7rbz2jgfh7hakv
  • Action:
    pregnancy_finding_code_sdr
    Status:
    Succeeded
    Job identifier:
    y3ajjb532vm4xlal
  • Action:
    algorithm_step_2d_pc_hes
    Status:
    Succeeded
    Job identifier:
    llg576a7xrbicwnn
  • Action:
    pc_vs_pc_hes_step2b_cluster_stream_summary
    Status:
    Succeeded
    Job identifier:
    gx5unfsnxjddqrin
  • Action:
    algorithm_step_2e
    Status:
    Succeeded
    Job identifier:
    c324k3jl4k67xijb
  • Action:
    timing_event_cluster_range_sdr
    Status:
    Succeeded
    Job identifier:
    w2z3wf56whvdnrmi
  • Action:
    algorithm_step_2e_comparison
    Status:
    Succeeded
    Job identifier:
    ll7ogs6gr3eort3n
  • Action:
    algorithm_step_3a
    Status:
    Succeeded
    Job identifier:
    7rbxcrzre4mi7hoz
  • Action:
    miscarriage_stillbirth_overlap_sdr
    Status:
    Succeeded
    Job identifier:
    vrtklpss6yrjomq5
  • Action:
    preterm_logic_validation_sdr
    Status:
    Succeeded
    Job identifier:
    nxozzf7bktbhdedb
  • Action:
    algorithm_step_3b
    Status:
    Succeeded
    Job identifier:
    m2ev2ucdpq4oclc4
  • Action:
    algorithm_step_3c
    Status:
    Succeeded
    Job identifier:
    bwsaf4ili4m2g4uq
  • Action:
    algorithm_step_3d
    Status:
    Succeeded
    Job identifier:
    pwectz735z4rfhba
  • Action:
    algorithm_step_4
    Status:
    Succeeded
    Job identifier:
    5ohhtie2rv5zjtf4
  • Action:
    algorithm_step_4_comparison
    Status:
    Succeeded
    Job identifier:
    xf6gxa5lignlp3jt
  • Action:
    compare_pc_hes_episodes
    Status:
    Succeeded
    Job identifier:
    ppvfzckj52nrfghy
  • Action:
    pc_hes_match_rates_icd_date_only_sdr
    Status:
    Succeeded
    Job identifier:
    kgeoca6mniyszvsc
  • Action:
    algorithm_step_2e_pc_hes
    Status:
    Succeeded
    Job identifier:
    qbhm2wnutq4itns2
  • Action:
    pc_vs_pc_hes_step2d_start_source_summary
    Status:
    Succeeded
    Job identifier:
    qbbyq4y2nvma5x3i
  • Action:
    algorithm_step_3a_pc_hes
    Status:
    Succeeded
    Job identifier:
    j23necvwm3kafrug
  • Action:
    antenatal_preterm_pipeline_counts_sdr_pc_hes
    Status:
    Succeeded
    Job identifier:
    3lkxaw6kpkbdbqkm
  • Action:
    diagnostic_boundary_censor_pc_hes
    Status:
    Succeeded
    Job identifier:
    yzntraycslxexeyq
  • Action:
    pc_hes_decision_support_sdr
    Status:
    Succeeded
    Job identifier:
    gfqhyl576zhbt7q5
  • Action:
    pc_vs_pc_hes_step2e_mode_preterm_by_cluster_source
    Status:
    Succeeded
    Job identifier:
    3kwpi6ccwiacxvkp
  • Action:
    post_outcome_edd_recovery_impact_sdr
    Status:
    Succeeded
    Job identifier:
    3zvkeihyuvh2ed33
  • Action:
    pregnancy_algorithm_sdr_pc_hes
    Status:
    Succeeded
    Job identifier:
    b55nrptcjgtdfnu4
  • Action:
    algorithm_step_3b_pc_hes
    Status:
    Succeeded
    Job identifier:
    y5373j5sbvzlzee6
  • Action:
    algorithm_step_3c_pc_hes
    Status:
    Succeeded
    Job identifier:
    2hg4bj4l35cbvbli
  • Action:
    algorithm_step_3d_pc_hes
    Status:
    Succeeded
    Job identifier:
    wuqcqwx3yvco2kas
  • Action:
    algorithm_step_4_pc_hes
    Status:
    Succeeded
    Job identifier:
    yt65bkxzwciz6gqa
  • Action:
    clean_episodes_maternal_age_imd_ethnicity
    Status:
    Succeeded
    Job identifier:
    rif4yjgguihf7yb5
  • Action:
    early_loss_code_contribution_sdr_pc_hes
    Status:
    Succeeded
    Job identifier:
    73at43utfwe2u5hg
  • Action:
    manuscript_table_10_inter_episode_gap_wide
    Status:
    Succeeded
    Job identifier:
    jnma5lwhbqfnihdr
  • Action:
    manuscript_table_14_15_delivery_composition
    Status:
    Succeeded
    Job identifier:
    imeqwpdp4clv6dg6
  • Action:
    miscarriage_source_mix_by_year_sdr_pc_hes
    Status:
    Succeeded
    Job identifier:
    7pfi6nsmgekdj5ac
  • Action:
    pc_vs_pc_hes_comparison_sdr
    Status:
    Succeeded
    Job identifier:
    is5dsfcxgg6omkix
  • Action:
    pc_vs_pc_hes_step4_episode_outcome_stream_summary
    Status:
    Succeeded
    Job identifier:
    niesfufd2e3y6fcn
  • Action:
    pc_vs_pc_hes_step4_outcome_comparison
    Status:
    Succeeded
    Job identifier:
    jeedu3icksrf2voc
  • Action:
    pregnancy_snomed_outcome_distance_sdr_pc_hes
    Status:
    Succeeded
    Job identifier:
    efhslpfejzuxwrgq
  • Action:
    sdr_admission_only_episode_count_pc_hes
    Status:
    Succeeded
    Job identifier:
    orrps2zb6inbm7wg
  • Action:
    sdr_admission_only_livebirth_drop_pc_hes
    Status:
    Succeeded
    Job identifier:
    gvvuuwzmuqbjpcmt
  • Action:
    sdr_delivery_plurality
    Status:
    Succeeded
    Job identifier:
    mbod7cv6fprlxgbu
  • Action:
    sdr_delivery_plurality_term_order
    Status:
    Succeeded
    Job identifier:
    fm2hltjci2kaldxy
  • Action:
    sdr_episode_age_plausibility_pc_hes
    Status:
    Succeeded
    Job identifier:
    qwvvbwqrkvl2wjo5
  • Action:
    sdr_fetal_death_opcs_sensitivity_pc_hes
    Status:
    Succeeded
    Job identifier:
    amirmbsq6foemev3
  • Action:
    sdr_miscarriage_delivery_context_counterfactual_pc_hes
    Status:
    Succeeded
    Job identifier:
    qjchmudy66esyrez
  • Action:
    sdr_step2b_age_sex_counterfactual_pc_hes
    Status:
    Succeeded
    Job identifier:
    zwtf5u25cfhfj5im
  • Action:
    sdr_step2b_cluster_composition_pc_hes
    Status:
    Succeeded
    Job identifier:
    fzxzensxbjxasejw
  • Action:
    sdr_step2b_row_fix_sensitivity_pc_hes
    Status:
    Succeeded
    Job identifier:
    ny6fyvp6xkd7kvje
  • Action:
    clean_episodes_chronic_conditions
    Status:
    Succeeded
    Job identifier:
    tx7yb4f4rhh3u26m
  • Action:
    demographics_outcomes_by_ethnicity_age_imd_sdr_pc_hes
    Status:
    Succeeded
    Job identifier:
    6ikaswy6rloey3yo
  • Action:
    ethnicity_outcomes_by_category_sdr_pc_hes
    Status:
    Succeeded
    Job identifier:
    a6dls6v2dkhpdwdt
  • Action:
    sdr_weak_delivery_context_breakdown_pc_hes
    Status:
    Succeeded
    Job identifier:
    w6fr7qgeo25y3czt
  • Action:
    chronic_conditions_prevalence_sdr_pc_hes
    Status:
    Succeeded
    Job identifier:
    n4g46he3ryoxj7ot
  • Action:
    manuscript_tables_output_1
    Status:
    Succeeded
    Job identifier:
    barsrlsnay7dp33i
  • Action:
    outcome_measures_validation_sdr_pc_hes
    Status:
    Succeeded
    Job identifier:
    noqu7s4wapuwxsti
  • Action:
    stillbirth_codelist_sensitivity
    Status:
    Succeeded
    Job identifier:
    5h4dkplptcjdhfbf
  • Action:
    compare_2019_vs_2009_subset
    Status:
    Failed
    Job identifier:
    p2vdbnjvn4yx4z3z
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    copy_2009_run_results
    Status:
    Failed
    Job identifier:
    gatomnrieycuvcz2
    Status message:
    dependency_failed: Not starting as dependency failed

Pipeline

Show project.yaml
This file is too large to render, try viewing it on GitHub .

Job statistics

Status Count Percentage
Pending 0 0%
Running 0 0%
Succeeded 89 96.7%
Failed 3 3.3%

92 / 92 (100%) complete

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 428:14:58

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
openpregnosis_longitudinal_main
Requested by
Paolo Mazzone
Branch
main
Force run dependencies
No
Git commit hash
80208a8
Requested actions
  • generate_diagnostic_event_counts
  • analyze_diagnostic_event_counts
  • generate_early_markers_data_2009_2013
  • generate_early_markers_data_2014_2018
  • generate_early_markers_data_2019_2026
  • generate_early_ga_numeric_markers_data_2009_2013
  • generate_early_ga_numeric_markers_data_2014_2018
  • generate_early_ga_numeric_markers_data_2019_2026
  • export_codelists_for_r
  • convert_lmp_episodes
  • convert_edd_episodes
  • convert_edc_episodes
  • convert_antenatal_ga_timed
  • convert_antenatal_ga_window
  • convert_birth_ga_timed
  • convert_birth_ga_window
  • convert_ga_numeric_fallback
  • algorithm_step_1
  • same_day_event_analysis
  • algorithm_step_2a
  • algorithm_step_2b
  • algorithm_step_2d
  • stillbirth_codelist_sensitivity
  • preterm_logic_validation_sdr
  • timing_event_cluster_range_sdr
  • pregnancy_finding_code_sdr
  • pregnancy_snomed_outcome_distance_sdr_pc_hes
  • numeric_value_profiling_sdr
  • dating_numeric_value_profiling_sdr
  • clean_episodes_maternal_age_imd_ethnicity
  • ethnicity_outcomes_by_category_sdr_pc_hes
  • demographics_outcomes_by_ethnicity_age_imd_sdr_pc_hes
  • analyse_chronic_conditions_pc_diagnostic
  • generate_asthma_pc_data_2009_2013
  • generate_asthma_pc_data_2014_2018
  • generate_asthma_pc_data_2019_2026
  • clean_episodes_chronic_conditions
  • chronic_conditions_prevalence_sdr_pc_hes
  • outcome_measures_validation_sdr_pc_hes
  • miscarriage_source_mix_by_year_sdr_pc_hes
  • early_loss_code_contribution_sdr_pc_hes
  • pc_vs_pc_hes_comparison_sdr
  • manuscript_tables_output_1
  • manuscript_table_10_inter_episode_gap_wide
  • manuscript_table_14_15_delivery_composition
  • sdr_delivery_plurality
  • sdr_delivery_plurality_term_order
  • pc_hes_decision_support_sdr
  • post_outcome_edd_recovery_impact_sdr
  • antenatal_preterm_pipeline_counts_sdr_pc_hes
  • miscarriage_stillbirth_overlap_sdr
  • algorithm_step_2e
  • algorithm_step_2b_comparison
  • algorithm_step_2b_impact_analysis
  • algorithm_step_2b_cluster_start_analysis
  • algorithm_step_2e_comparison
  • algorithm_step_3a
  • algorithm_step_3b
  • algorithm_step_3c
  • algorithm_step_3d
  • algorithm_step_4
  • algorithm_step_1_pc_hes
  • algorithm_step_2a_pc_hes
  • algorithm_step_2b_pc_hes
  • algorithm_step_2d_pc_hes
  • diagnostic_boundary_censor_pc_hes
  • algorithm_step_2e_pc_hes
  • algorithm_step_3a_pc_hes
  • algorithm_step_3b_pc_hes
  • algorithm_step_3c_pc_hes
  • algorithm_step_3d_pc_hes
  • algorithm_step_4_pc_hes
  • pc_vs_pc_hes_step4_outcome_comparison
  • pc_vs_pc_hes_step2b_cluster_stream_summary
  • pc_vs_pc_hes_step2d_start_source_summary
  • pc_vs_pc_hes_step2e_mode_preterm_by_cluster_source
  • pc_vs_pc_hes_step4_episode_outcome_stream_summary
  • pregnancy_algorithm_sdr_pc_hes
  • sdr_fetal_death_opcs_sensitivity_pc_hes
  • sdr_step2b_row_fix_sensitivity_pc_hes
  • sdr_admission_only_episode_count_pc_hes
  • sdr_miscarriage_delivery_context_counterfactual_pc_hes
  • sdr_weak_delivery_context_breakdown_pc_hes
  • sdr_episode_age_plausibility_pc_hes
  • sdr_step2b_age_sex_counterfactual_pc_hes
  • sdr_step2b_cluster_composition_pc_hes
  • sdr_admission_only_livebirth_drop_pc_hes
  • algorithm_step_4_comparison
  • pc_hes_match_rates_icd_date_only_sdr
  • compare_pc_hes_episodes
  • copy_2009_run_results
  • compare_2019_vs_2009_subset

Code comparison

Compare the code used in this job request