Job request: 24447
- Organisation:
- Bennett Institute
- Workspace:
- openpathology-main
- ID:
- 6vu3hk7ntkyfcaie
This page shows the technical details of what happened when the authorised researcher Jaidip Gill requested one or more actions to be run against real patient data in the project, within a secure environment.
By cross-referencing the list of jobs with the
pipeline section below, you can infer what
security level
various outputs were written to. Researchers can never directly
view outputs marked as
highly_sensitive
;
they can only request that code runs against them. Outputs
marked as
moderately_sensitive
can be viewed by an approved researcher by logging into a highly
secure environment. Only outputs marked as
moderately_sensitive
can be requested for release to the public, via a controlled
output review service.
Jobs
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- Job identifier:
-
5ghy6zzoafb6wa2h
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- Job identifier:
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zl5ppp7tbkuwlruo
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- Job identifier:
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k75qu6fauqxjxrc4
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- Job identifier:
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jx3pgjqcrnndpue3
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- Job identifier:
-
7gf72cefoixt6fz4
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- Job identifier:
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66i4jlhouehb743z
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- Job identifier:
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t34nprvdkan4ecuo
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- Job identifier:
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5vtdfz5qszbz6vqz
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- Job identifier:
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vonjwxmq26jxjv4t
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- Job identifier:
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r6gn3h74efo7z3wb
Pipeline
Show project.yaml
version: '4.0'
actions:
generate_measures_alt_tests:
run: >
ehrql:v1 generate-measures
analysis/measure_definition.py
--output output/alt_tests/measures.arrow
--
--codelist codelists/opensafely-alanine-aminotransferase-alt-tests.csv
outputs:
highly_sensitive:
measures: output/alt_tests/measures.arrow
generate_processed_data_alt_tests:
run: >
python:latest
analysis/write_processed_csv_files.py
--output-dir output/alt_tests
--codelist codelists/opensafely-alanine-aminotransferase-alt-tests.csv
needs:
[generate_measures_alt_tests]
outputs:
moderately_sensitive:
decile_table: output/alt_tests/deciles_table_counts_per_week_per_practice.csv
code_table: output/alt_tests/top_5_code_table.csv
event_counts_table: output/alt_tests/event_counts.csv
generate_measures_chol_tests:
run: >
ehrql:v1 generate-measures
analysis/measure_definition.py
--output output/chol_tests/measures.arrow
--
--codelist codelists/opensafely-cholesterol-tests.csv
outputs:
highly_sensitive:
measures: output/chol_tests/measures.arrow
generate_processed_data_chol_tests:
run: >
python:latest
analysis/write_processed_csv_files.py
--output-dir output/chol_tests
--codelist codelists/opensafely-cholesterol-tests.csv
needs:
[generate_measures_chol_tests]
outputs:
moderately_sensitive:
decile_table: output/chol_tests/deciles_table_counts_per_week_per_practice.csv
code_table: output/chol_tests/top_5_code_table.csv
event_counts_table: output/chol_tests/event_counts.csv
generate_measures_hba1c_tests:
run: >
ehrql:v1 generate-measures
analysis/measure_definition.py
--output output/hba1c_tests/measures.arrow
--
--codelist codelists/opensafely-glycated-haemoglobin-hba1c-tests.csv
outputs:
highly_sensitive:
measures: output/hba1c_tests/measures.arrow
generate_processed_data_hba1c_tests:
run: >
python:latest
analysis/write_processed_csv_files.py
--output-dir output/hba1c_tests
--codelist codelists/opensafely-glycated-haemoglobin-hba1c-tests.csv
needs:
[generate_measures_hba1c_tests]
outputs:
moderately_sensitive:
decile_table: output/hba1c_tests/deciles_table_counts_per_week_per_practice.csv
code_table: output/hba1c_tests/top_5_code_table.csv
event_counts_table: output/hba1c_tests/event_counts.csv
generate_measures_rbc_tests:
run: >
ehrql:v1 generate-measures
analysis/measure_definition.py
--output output/rbc_tests/measures.arrow
--
--codelist codelists/opensafely-red-blood-cell-rbc-tests.csv
outputs:
highly_sensitive:
measures: output/rbc_tests/measures.arrow
generate_processed_data_rbc_tests:
run: >
python:latest
analysis/write_processed_csv_files.py
--output-dir output/rbc_tests
--codelist codelists/opensafely-red-blood-cell-rbc-tests.csv
needs:
[generate_measures_rbc_tests]
outputs:
moderately_sensitive:
decile_table: output/rbc_tests/deciles_table_counts_per_week_per_practice.csv
code_table: output/rbc_tests/top_5_code_table.csv
event_counts_table: output/rbc_tests/event_counts.csv
generate_measures_sodium_tests:
run: >
ehrql:v1 generate-measures
analysis/measure_definition.py
--output output/sodium_tests/measures.arrow
--
--codelist codelists/opensafely-sodium-tests-numerical-value.csv
outputs:
highly_sensitive:
measures: output/sodium_tests/measures.arrow
generate_processed_data_sodium_tests:
run: >
python:latest
analysis/write_processed_csv_files.py
--output-dir output/sodium_tests
--codelist codelists/opensafely-sodium-tests-numerical-value.csv
needs:
[generate_measures_sodium_tests]
outputs:
moderately_sensitive:
decile_table: output/sodium_tests/deciles_table_counts_per_week_per_practice.csv
code_table: output/sodium_tests/top_5_code_table.csv
event_counts_table: output/sodium_tests/event_counts.csv
generate_measures_systol_tests:
run: >
ehrql:v1 generate-measures
analysis/measure_definition.py
--output output/systol_tests/measures.arrow
--
--codelist codelists/opensafely-systolic-blood-pressure-qof.csv
outputs:
highly_sensitive:
measures: output/systol_tests/measures.arrow
generate_processed_data_systol_tests:
run: >
python:latest
analysis/write_processed_csv_files.py
--output-dir output/systol_tests
--codelist codelists/opensafely-systolic-blood-pressure-qof.csv
needs:
[generate_measures_systol_tests]
outputs:
moderately_sensitive:
decile_table: output/systol_tests/deciles_table_counts_per_week_per_practice.csv
code_table: output/systol_tests/top_5_code_table.csv
event_counts_table: output/systol_tests/event_counts.csv
Timeline
-
Created:
-
Started:
-
Finished:
-
Runtime: 23:36:30
These timestamps are generated and stored using the UTC timezone on the TPP backend.
Job information
- Status
-
Succeeded
- Backend
- TPP
- Workspace
- openpathology-main
- Requested by
- Jaidip Gill
- Branch
- main
- Force run dependencies
- No
- Git commit hash
- 121c5f6
- Requested actions
-
-
generate_measures_alt_tests
-
generate_processed_data_alt_tests
-
generate_measures_chol_tests
-
generate_processed_data_chol_tests
-
generate_measures_rbc_tests
-
generate_processed_data_rbc_tests
-
generate_measures_sodium_tests
-
generate_processed_data_sodium_tests
-
generate_measures_systol_tests
-
generate_processed_data_systol_tests
-
Code comparison
Compare the code used in this Job Request