Job request: 10732
- Organisation:
- Bennett Institute
- Workspace:
- opensafely-interactive
- ID:
- xqu3kio6yyjt7gwa
This page shows the technical details of what happened when authorised researcher opensafely-interactive requested one or more actions to be run against real patient data in the project, within a secure environment.
By cross-referencing the indicated Requested Actions with the
Pipeline section below, you can infer what
security level
various outputs were written to. Outputs marked as
highly_sensitive
can never be viewed directly by a researcher; they can only
request that code runs against them. Outputs marked as
moderately_sensitive
can be viewed by an approved researcher by logging into a highly
secure environment. Only outputs marked as
moderately_sensitive
can be requested for release to the public, via a controlled
output review service.
Jobs
-
- Job identifier:
-
ptinoeijvd5iresf
-
- Job identifier:
-
odndbog7agoumeit
-
- Job identifier:
-
n255hktgxmkgr7mw
-
- Job identifier:
-
qdndhauzdysguazo
Pipeline
Show project.yaml
version: '3.0'
expectations:
population_size: 1000
actions:
codelist_report_02qcuysQre7crGli1N9Nq7:
run: >
cohortextractor:latest generate_codelist_report
--codelist-path=codelist.csv
--start-date=2019-09-01
--end-date=2022-07-27
--output-dir output/02qcuysQre7crGli1N9Nq7
outputs:
moderately_sensitive:
table: output/02qcuysQre7crGli1N9Nq7/counts_per_*.csv
list_sizes: output/02qcuysQre7crGli1N9Nq7/list_sizes.csv
patient_count_table: output/02qcuysQre7crGli1N9Nq7/patient_count.csv
measures_02qcuysQre7crGli1N9Nq7:
run: >
python:latest python analysis/generate_measures.py
--start-date=2019-09-01
--end-date=2022-07-27
--output-dir output/02qcuysQre7crGli1N9Nq7
--low-count-threshold 100
--rounding-base 10
needs: [codelist_report_02qcuysQre7crGli1N9Nq7]
outputs:
moderately_sensitive:
measure: output/02qcuysQre7crGli1N9Nq7/measure_counts_per_week_per_practice.csv
events_count_table: output/02qcuysQre7crGli1N9Nq7/for_release/event_counts.csv
practice_count_table: output/02qcuysQre7crGli1N9Nq7/for_release/practice_count.csv
top_5_table_02qcuysQre7crGli1N9Nq7:
run: >
python:latest python analysis/top_codes_table.py
--start-date=2019-09-01
--end-date=2022-07-27
--output-dir output/02qcuysQre7crGli1N9Nq7
--low-count-threshold 100
--rounding-base 10
needs: [codelist_report_02qcuysQre7crGli1N9Nq7]
outputs:
moderately_sensitive:
table: output/02qcuysQre7crGli1N9Nq7/for_release/top_5_code_table.csv
deciles_charts_02qcuysQre7crGli1N9Nq7:
run: >
deciles-charts:v0.0.24
--input-files output/02qcuysQre7crGli1N9Nq7/measure_counts_per_week_per_practice.csv
--output-dir output/02qcuysQre7crGli1N9Nq7/for_release
config:
show_outer_percentiles: false
tables:
output: false
charts:
output: true
needs: [measures_02qcuysQre7crGli1N9Nq7]
outputs:
moderately_sensitive:
deciles_charts: output/02qcuysQre7crGli1N9Nq7/for_release/deciles_*.*
Timeline
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Created:
-
Started:
-
Finished:
-
Runtime: 00:05:04
These timestamps are generated and stored using the UTC timezone on the TPP backend.
Job information
- Status
-
Succeeded
- Backend
- TPP
- Workspace
- opensafely-interactive
- Requested by
- opensafely-interactive
- Branch
- main
- Force run dependencies
- Yes
- Git commit hash
- 11bf079
- Requested actions
-
-
run_all
-
Code comparison
Compare the code used in this Job Request