Job request: 8025
- Organisation:
- Bennett Institute
- Workspace:
- opensafely-interactive
- ID:
- t7lnr7o5w62tfo7p
This page shows the technical details of what happened when authorised researcher Simon Davy requested one or more actions to be run against real patient data in the project, within a secure environment.
By cross-referencing the indicated Requested Actions with the
Pipeline section below, you can infer what
security level
various outputs were written to. Outputs marked as
highly_sensitive
can never be viewed directly by a researcher; they can only
request that code runs against them. Outputs marked as
moderately_sensitive
can be viewed by an approved researcher by logging into a highly
secure environment. Only outputs marked as
moderately_sensitive
can be requested for release to the public, via a controlled
output review service.
Pipeline
Show project.yaml
version: '3.0'
expectations:
population_size: 1000
actions:
generate_codelist_report:
run: >
cohortextractor:latest generate_codelist_report
--codelist-path=codelist.csv
--start-date=2020-01-01
--end-date=2021-12-31
--output-dir output/02ppFpIUxRztuk8E7CLkZn
outputs:
moderately_sensitive:
table: output/*/counts_per_*.csv
list_sizes: output/*/list_sizes.csv
generate_measures:
run: python:latest python analysis/generate_measures.py output/02ppFpIUxRztuk8E7CLkZn
needs: [generate_codelist_report]
outputs:
moderately_sensitive:
measure: output/*/measure_counts_per_week_per_practice.csv
generate_top_5_table:
run: python:latest python analysis/top_codes_table.py output/02ppFpIUxRztuk8E7CLkZn
needs: [generate_codelist_report]
outputs:
moderately_sensitive:
table: output/*/top_5_code_table.csv
generate_deciles_charts:
run: >
deciles-charts:v0.0.15
--input-files output/measure_counts_per_week_per_practice.csv
--output-dir output/02ppFpIUxRztuk8E7CLkZn
config:
show_outer_percentiles: false
tables:
output: true
charts:
output: true
needs: [generate_measures]
outputs:
moderately_sensitive:
deciles_charts: output/*/deciles_*_*.*
Timeline
-
Created:
-
Started:
-
Finished:
-
Runtime:
These timestamps are generated and stored using the UTC timezone on the TPP backend.
Job information
- Status
-
Failed
GithubValidationError: Could not find commit on branch 'main': 02ppFpIUxRztuk8E7CLkZn
- Backend
- TPP
- Workspace
- opensafely-interactive
- Requested by
- Simon Davy
- Branch
- main
- Force run dependencies
- No
- Git commit hash
- 02ppFpI
- Requested actions
-
-
run_all
-
Code comparison
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