Job request: 9419
- Organisation:
- Bennett Institute
- Workspace:
- opensafely-interactive
- ID:
- b4y453xqg66rftbe
This page shows the technical details of what happened when authorised researcher opensafely-interactive requested one or more actions to be run against real patient data in the project, within a secure environment.
By cross-referencing the indicated Requested Actions with the
Pipeline section below, you can infer what
security level
various outputs were written to. Outputs marked as
highly_sensitive
can never be viewed directly by a researcher; they can only
request that code runs against them. Outputs marked as
moderately_sensitive
can be viewed by an approved researcher by logging into a highly
secure environment. Only outputs marked as
moderately_sensitive
can be requested for release to the public, via a controlled
output review service.
Jobs
-
- Job identifier:
-
msvv5ippewopfwkb
-
- Job identifier:
-
cum7dy4kgfv42fex
-
- Job identifier:
-
fx3jmpv7wliallrd
-
- Job identifier:
-
6eygle2b5b5b7zmt
Pipeline
Show project.yaml
version: '3.0'
expectations:
population_size: 1000
actions:
codelist_report_02q8kPFd0iDbUnEIq2KKrG:
run: >
cohortextractor:latest generate_codelist_report
--codelist-path=codelist.csv
--start-date=2019-09-01
--end-date=2022-06-08
--output-dir output/02q8kPFd0iDbUnEIq2KKrG
outputs:
moderately_sensitive:
table: output/02q8kPFd0iDbUnEIq2KKrG/counts_per_*.csv
list_sizes: output/02q8kPFd0iDbUnEIq2KKrG/list_sizes.csv
patient_count_table: output/02q8kPFd0iDbUnEIq2KKrG/patient_count.csv
measures_02q8kPFd0iDbUnEIq2KKrG:
run: python:latest python analysis/generate_measures.py output/02q8kPFd0iDbUnEIq2KKrG
needs: [codelist_report_02q8kPFd0iDbUnEIq2KKrG]
outputs:
moderately_sensitive:
measure: output/02q8kPFd0iDbUnEIq2KKrG/measure_counts_per_week_per_practice.csv
events_count_table: output/02q8kPFd0iDbUnEIq2KKrG/event_counts.csv
practice_count_table: output/02q8kPFd0iDbUnEIq2KKrG/practice_count.csv
top_5_table_02q8kPFd0iDbUnEIq2KKrG:
run: python:latest python analysis/top_codes_table.py output/02q8kPFd0iDbUnEIq2KKrG
needs: [codelist_report_02q8kPFd0iDbUnEIq2KKrG]
outputs:
moderately_sensitive:
table: output/02q8kPFd0iDbUnEIq2KKrG/top_5_code_table.csv
deciles_charts_02q8kPFd0iDbUnEIq2KKrG:
run: >
deciles-charts:v0.0.24
--input-files output/02q8kPFd0iDbUnEIq2KKrG/measure_counts_per_week_per_practice.csv
--output-dir output/02q8kPFd0iDbUnEIq2KKrG
config:
show_outer_percentiles: false
tables:
output: true
charts:
output: true
needs: [measures_02q8kPFd0iDbUnEIq2KKrG]
outputs:
moderately_sensitive:
deciles_charts: output/02q8kPFd0iDbUnEIq2KKrG/deciles_*.*
Timeline
-
Created:
-
Started:
-
Finished:
-
Runtime: 00:04:22
These timestamps are generated and stored using the UTC timezone on the TPP backend.
Job information
- Status
-
Succeeded
- Backend
- TPP
- Workspace
- opensafely-interactive
- Requested by
- opensafely-interactive
- Branch
- main
- Force run dependencies
- Yes
- Git commit hash
- b6e8200
- Requested actions
-
-
run_all
-
Code comparison
Compare the code used in this Job Request