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Job request: 27421

Organisation:
Bennett Institute
Workspace:
tpp-counts-by-year-activated
ID:
ve7hop33zbxeyf4r
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Andrea Schaffer requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    measures_patients
    Status:
    Pending
    Job identifier:
    mc3ir7mvx3irpybe
    Status message:
    waiting_on_db_workers: Waiting on available database workers
  • Action:
    measures_practices
    Status:
    Pending
    Job identifier:
    fi3k6nzb2kopduuw
    Status message:
    waiting_on_db_workers: Waiting on available database workers
  • Action:
    checks
    Status:
    Pending
    Job identifier:
    3lrcwteo4sjiwlzc
    Status message:
    waiting_on_dependencies: Waiting on dependencies
  • Action:
    counts_year
    Status:
    Pending
    Job identifier:
    4lbonsz2pun3xtsc
    Status message:
    waiting_on_dependencies: Waiting on dependencies
  • Action:
    counts_practices
    Status:
    Pending
    Job identifier:
    j27i7ecuntvgf6rz
    Status message:
    waiting_on_dependencies: Waiting on dependencies
  • Action:
    run_post_filtering_only
    Status:
    Pending
    Job identifier:
    dpp42afwa3fjax6c
    Status message:
    waiting_on_dependencies: Waiting on dependencies

Pipeline

Show project.yaml 
version: '5.0'

actions:
  measures_patients:
    run: ehrql:v1 generate-measures analysis/measures_patients.py 
      --output output/measures/measures_patients.csv
    outputs:
      moderately_sensitive:
        measure_csv: output/measures/measures_patients.csv

  measures_practices:
    run: ehrql:v1 generate-measures analysis/measures_practices.py 
      --output output/measures/measures_practices.csv.gz
    outputs:
      highly_sensitive:
        measure_csv: output/measures/measures_practices.csv.gz

  checks:
    run: r:v2 analysis/0_tpp_checks.R
    needs: [measures_practices]
    outputs:
      moderately_sensitive:
        csv1: output/processed/tpp_practices_check_2009.csv
        csv2: output/processed/tpp_practices_check_2025.csv

  counts_year:
    run: r:v2 analysis/1_tpp_counts_by_year.R
    needs: [measures_patients, measures_practices]
    outputs:
      moderately_sensitive:
        csv1: output/processed/tpp_counts_by_year.csv
        
  counts_practices:
    run: r:v2 analysis/2_tpp_counts_practices.R
    needs: [measures_patients, measures_practices]
    outputs:
      moderately_sensitive:
        csv1: output/processed/tpp_practices_years.csv
        csv2: output/processed/tpp_practices_wide.csv
        png: output/processed/figures/practices*.png
        
  run_pre_filtering_only:
    run: r:v2 analysis/3a_prefiltering.R
    needs: [counts_year, counts_practices]
    outputs:
      moderately_sensitive:
        csv1: output/prefiltering/tpp_counts_pre_filtering.csv
        csv2: output/prefiltering/tpp_practices_pre_filtering.csv

  run_post_filtering_only:
    run: r:v2 analysis/3b_postfiltering.R
    needs: [counts_year, counts_practices]
    outputs:
       moderately_sensitive:
          csv1: output/postfiltering/tpp_counts_post_filtering.csv
          csv2: output/postfiltering/tpp_practices_post_filtering.csv

Job statistics

Status Count Percentage
Pending 6 100%
Running 0 0%
Succeeded 0 0%
Failed 0 0%

0 / 6 (0%) complete

Timeline

  • Created:

  • Runtime:

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Pending
Backend
TPP
Workspace
tpp-counts-by-year-activated
Requested by
Andrea Schaffer
Branch
main
Force run dependencies
No
Git commit hash
d8d1243
Requested actions
  • measures_patients
  • measures_practices
  • checks
  • counts_year
  • counts_practices
  • run_post_filtering_only

Code comparison

Compare the code used in this job request

  • No previous job request available for comparison