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Job request: 17660

Organisation:
Bennett Institute
Workspace:
airmid-short-data-report
ID:
hxndlnyl4s2e7kig
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Iain Dillingham requested one or more actions to be run against real patient data in the project, within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level various outputs were written to. Researchers can never directly view outputs marked as highly_sensitive ; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

Jobs

  • Action:
    code_system_id
    Status:
    Status: Succeeded
    Job identifier:
    v5tdndrnozduglw5
  • Action:
    patient_id
    Status:
    Status: Succeeded
    Job identifier:
    6kzffv6vk3kmiewk
  • Action:
    coded_event_id
    Status:
    Status: Succeeded
    Job identifier:
    upjvbqdgxjmp5tsb
  • Action:
    consultation_date
    Status:
    Status: Succeeded
    Job identifier:
    jn7mlojd66qernm5
  • Action:
    consultation_id
    Status:
    Status: Succeeded
    Job identifier:
    e5egwnycde5cq4mz

Pipeline

Show project.yaml 
version: "3.0"

expectations:
  population_size: 1000

actions:
  patient_id:
    run: sqlrunner:latest
      --output output/patient_id/rows.csv
      --dummy-data-file analysis/patient_id/dummy_rows.csv
      analysis/patient_id/query.sql
    outputs:
      moderately_sensitive:
        rows: output/patient_id/rows.csv

  code_system_id:
    run: sqlrunner:latest
      --output output/code_system_id/rows.csv
      --dummy-data-file analysis/code_system_id/dummy_rows.csv
      analysis/code_system_id/query.sql
    outputs:
      moderately_sensitive:
        rows: output/code_system_id/rows.csv

  coded_event_id:
    run: sqlrunner:latest
      --output output/coded_event_id/rows.csv
      --dummy-data-file analysis/coded_event_id/dummy_rows.csv
      analysis/coded_event_id/query.sql
    outputs:
      moderately_sensitive:
        rows: output/coded_event_id/rows.csv

  consultation_date:
    run: sqlrunner:latest
      --output output/consultation_date/rows.csv
      --dummy-data-file analysis/consultation_date/dummy_rows.csv
      analysis/consultation_date/query.sql
    outputs:
      moderately_sensitive:
        rows: output/consultation_date/rows.csv

  consultation_id:
    run: sqlrunner:latest
      --output output/consultation_id/rows.csv
      --dummy-data-file analysis/consultation_id/dummy_rows.csv
      analysis/consultation_id/query.sql
    outputs:
      moderately_sensitive:
        rows: output/consultation_id/rows.csv

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:01:54

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job information

Status
Succeeded
Backend
TPP
Workspace
airmid-short-data-report
Requested by
Iain Dillingham
Branch
main
Force run dependencies
Yes
Git commit hash
92b3c53
Requested actions
  • run_all

Code comparison

Compare the code used in this Job Request