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Job request: 14727

Organisation:
Bennett Institute
Workspace:
blank-dmd-investigation
ID:
o3m2jchb7yew4ona
View repo View project.yaml

This page shows the technical details of what happened when authorised researcher Jon Massey requested one or more actions to be run against real patient data in the project, within a secure environment.

By cross-referencing the indicated Requested Actions with the Pipeline section below, you can infer what security level various outputs were written to. Outputs marked as highly_sensitive can never be viewed directly by a researcher; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

Jobs

Pipeline

Show project.yaml 
version: "3.0"

expectations:
  population_size: 1000

actions:
  query_medication_issues:
    run: >
      sqlrunner:latest
        --output output/medication_issues.csv
        analysis/medication_issues.sql
    outputs:
      highly_sensitive:
        rows: output/medication_issues.csv
  query_medication_dictionary:
    run: >
      sqlrunner:latest
        --output output/medication_dictionary.csv
        analysis/medication_dictionary.sql
    outputs:
      highly_sensitive:
        rows: output/medication_dictionary.csv
  suppress_low_counts:
    run: >
      python:latest python analysis/suppress_low_counts.py
    needs:
      - query_medication_issues
      - query_medication_dictionary
    outputs:
      moderately_sensitive:
        issues: output/suppressed/medication_issues.csv
        dictionary: output/suppressed/medication_dictionary.csv

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:04:54

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job information

Status
Succeeded
Backend
TPP
Workspace
blank-dmd-investigation
Requested by
Jon Massey
Branch
main
Force run dependencies
No
Git commit hash
5a59a71
Requested actions
  • run_all

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