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Job request: 21482

Organisation:
Bennett Institute
Workspace:
coded-event-performance-evaluation
ID:
w753tlv6cxoazvp6
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Jon Massey requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    clinical_events_with_codelist_ctv3
    Status:
    Failed
    Job identifier:
    lbr3h7sjli4ndxbp
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    clinical_events_with_codelist_snomed
    Status:
    Failed
    Job identifier:
    bd6ptpo6fcnivven
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    comparator_from_with_codelist_ctv3
    Status:
    Failed
    Job identifier:
    x2i6gcutdmnmfwef
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    comparator_from_with_codelist_snomed
    Status:
    Failed
    Job identifier:
    sjxgjhrokuytdxy6
    Error:
    nonzero_exit: Job exited with an error

Pipeline

Show project.yaml 
version: '3.0'

# Ignore this`expectation` block. It is required but not used, and will be removed in future versions.
expectations:
  population_size: 1000

actions:
  clinical_events:
    run: >
      sqlrunner:latest
        analysis/clinical_events.sql
        --output output/clinical_events.csv.gz
        --dummy-data-file analysis/dummy.csv.gz
        --include-statistics
    outputs:  
      highly_sensitive:
        dummy: output/clinical_events.csv.gz
  clinical_events_with_codelist_ctv3:
    run: >
      sqlrunner:latest
        analysis/clinical_events_with_codelist_ctv3.sql
        --output output/clinical_events_with_codelist_ctv3.csv.gz
        --dummy-data-file analysis/dummy.csv.gz
        --include-statistics
    outputs:  
      highly_sensitive:
        dummy: output/clinical_events_with_codelist_ctv3.csv.gz
  clinical_events_with_codelist_snomed:
    run: >
      sqlrunner:latest
        analysis/clinical_events_with_codelist_snomed.sql
        --output output/clinical_events_with_codelist_snomed.csv.gz
        --dummy-data-file analysis/dummy.csv.gz
        --include-statistics
    outputs:  
      highly_sensitive:
        dummy: output/clinical_events_with_codelist_snomed.csv.gz
  comparator_from:
    run: >
      sqlrunner:latest
        analysis/comparator_from.sql
        --output output/comparator_from.csv.gz
        --dummy-data-file analysis/dummy.csv.gz
        --include-statistics
    outputs:  
      highly_sensitive:
        dummy: output/comparator_from.csv.gz
  comparator_from_with_codelist_ctv3:
    run: >
      sqlrunner:latest
        analysis/comparator_from_with_codelist_ctv3.sql
        --output output/comparator_from_with_codelist_ctv3.csv.gz
        --dummy-data-file analysis/dummy.csv.gz
        --include-statistics
    outputs:  
      highly_sensitive:
        dummy: output/comparator_from_with_codelist_ctv3.csv.gz
  comparator_from_with_codelist_snomed:
    run: >
      sqlrunner:latest
        analysis/comparator_from_with_codelist_snomed.sql
        --output output/comparator_from_with_codelist_snomed.csv.gz
        --dummy-data-file analysis/dummy.csv.gz
        --include-statistics
    outputs:  
      highly_sensitive:
        dummy: output/comparator_from_with_codelist_snomed.csv.gz

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:00:43

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
coded-event-performance-evaluation
Requested by
Jon Massey
Branch
main
Force run dependencies
No
Git commit hash
abd0494
Requested actions
  • clinical_events_with_codelist_ctv3
  • clinical_events_with_codelist_snomed
  • comparator_from_with_codelist_ctv3
  • comparator_from_with_codelist_snomed

Code comparison

Compare the code used in this job request

  • No previous job request available for comparison