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Job request: 14905

Organisation:
Bennett Institute
Workspace:
data-notebooks-andrea
ID:
nrbtlngrcxs47kzl
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Andrea Schaffer requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    clockstops_subset
    Status:
    Status: Failed
    Job identifier:
    esk3yl7yr4m5ixym
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    clockstops_explore
    Status:
    Status: Failed
    Job identifier:
    nng6c4rlh47afthe
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    openpathways_explore
    Status:
    Status: Failed
    Job identifier:
    frlrg77fb2pxeidy
    Error:
    nonzero_exit: Job exited with an error

Pipeline

Show project.yaml 
version: '3.0'

expectations:
  population_size: 10000

actions:

    clockstops_explore:
        run: jupyter:latest jupyter nbconvert /workspace/notebooks/WL_ClockStops_Explore.ipynb --execute --to html --output-dir=/workspace/output --ExecutePreprocessor.timeout=86400 --no-input
        outputs:
            moderately_sensitive:
                html: output/WL_ClockStops_Explore.html
                
    clockstops_subset:
        run: jupyter:latest jupyter nbconvert /workspace/notebooks/WL_ClockStops_Subset.ipynb --execute --to html --output-dir=/workspace/output --ExecutePreprocessor.timeout=86400 --no-input
        outputs:
            moderately_sensitive:
                html: output/WL_ClockStops_Subset.html
                
    openpathways_explore:
        run: jupyter:latest jupyter nbconvert /workspace/notebooks/WL_OpenPathways_Explore.ipynb --execute --to html --output-dir=/workspace/output --ExecutePreprocessor.timeout=86400 --no-input
        outputs:
            moderately_sensitive:
                html: output/WL_OpenPathways_Explore.html
    
    openpathways_subset:
        run: jupyter:latest jupyter nbconvert /workspace/notebooks/WL_OpenPathways_Subset.ipynb --execute --to html --output-dir=/workspace/output --ExecutePreprocessor.timeout=86400 --no-input
        outputs:
            moderately_sensitive:
                html: output/WL_OpenPathways_Subset.html

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:03:20

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
data-notebooks-andrea
Requested by
Andrea Schaffer
Branch
main
Force run dependencies
No
Git commit hash
f882a80
Requested actions
  • run_all

Code comparison

Compare the code used in this job request