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Job request: 1638

Organisation:
Bennett Institute
Workspace:
emis-qa-main
ID:
2zjuujlqfybtfk2e
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Iain Dillingham requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    generate_summary_notebook
    Status:
    Status: Failed
    Job identifier:
    zip3cazcdtrhp4bt
    Error:
    nonzero_exit: Job exited with an error code

Pipeline

Show project.yaml 
version: '3.0'

expectations:
  population_size: 1000

actions:

  generate_study_population:
    run: cohortextractor:latest generate_cohort --output-format feather --study-definition study_definition
    outputs:
      highly_sensitive:
        cohort: output/input.feather

  rotate_study_population:
    run: python:latest python analysis/rotate_study_population.py
    needs: [generate_study_population]
    outputs:
      highly_sensitive:
        cohort: output/input-last.feather

  generate_summary_notebook:
    run: python:latest jupyter nbconvert notebooks/summary.ipynb --to=html --output-dir=output/ --execute
    needs: [generate_study_population, rotate_study_population]
    outputs:
      moderately_sensitive:
        notebook: output/summary.html

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:00:46

These timestamps are generated and stored using the UTC timezone on the EMIS backend.

Job request

Status
Failed
Backend
EMIS
Workspace
emis-qa-main
Requested by
Iain Dillingham
Branch
main
Force run dependencies
No
Git commit hash
a507699
Requested actions
  • generate_summary_notebook

Code comparison

Compare the code used in this job request