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Job request: 2313

Organisation:
Bennett Institute
Workspace:
emis-qa-main
ID:
zpiiazai4skfldd5
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Iain Dillingham requested one or more actions to be run against real patient data in the project, within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level various outputs were written to. Researchers can never directly view outputs marked as highly_sensitive ; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

Jobs

Pipeline

Show project.yaml 
version: '3.0'

expectations:
  population_size: 1000

actions:

  generate_study_population:
    run: cohortextractor:latest generate_cohort --output-format feather --study-definition study_definition
    outputs:
      highly_sensitive:
        cohort: output/input.feather

  rotate_study_population:
    run: python:latest python analysis/rotate_study_population.py
    needs: [generate_study_population]
    outputs:
      highly_sensitive:
        cohort: output/input-last.feather

  generate_summary_notebook:
    run: python:latest jupyter nbconvert notebooks/summary.ipynb --to=html --output-dir=output/ --execute --ExecutePreprocessor.timeout=86400
    needs: [generate_study_population, rotate_study_population]
    outputs:
      moderately_sensitive:
        notebook: output/summary.html

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:39:15

These timestamps are generated and stored using the UTC timezone on the EMIS backend.

Job information

Status
Succeeded
Backend
EMIS
Workspace
emis-qa-main
Requested by
Iain Dillingham
Branch
main
Force run dependencies
No
Git commit hash
724089e
Requested actions
  • generate_study_population

Code comparison

Compare the code used in this Job Request