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Job request: 1084

Organisation:
Bennett Institute
Workspace:
emis-smoke-tests
ID:
26nxfroijihkxkir
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Simon Davy requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Pipeline

Show project.yaml 
version: '3.0'

expectations:
  population_size: 1000

actions:

  generate_study_population:
    run: cohortextractor:latest generate_cohort --study-definition study_definition
    outputs:
      highly_sensitive:
        cohort: output/input.csv

  run_model:
    run: python:latest python analysis/count_occurrences.py
    needs: [generate_study_population]
    outputs:
      moderately_sensitive:
        log: output/counts.json

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime:

These timestamps are generated and stored using the UTC timezone on the EMIS backend.

Job request

Status
Failed 
JobRequestError: All requested actions were already scheduled to run
Backend
EMIS
Workspace
emis-smoke-tests
Requested by
Simon Davy
Branch
master
Force run dependencies
No
Git commit hash
5e2fa0f
Requested actions
  • run_model

Code comparison

Compare the code used in this job request