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Job request: 4127

Organisation:
Bennett Institute
Workspace:
emis-smoke-tests
ID:
oun6ir26vtsvhbxl
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Ben Butler-Cole requested one or more actions to be run against real patient data in the project, within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level various outputs were written to. Researchers can never directly view outputs marked as highly_sensitive ; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

Jobs

  • Action:
    run_all
    Status:
    Status: Succeeded
    Job identifier:
    jfiqqah57uwdhpth

Pipeline

Show project.yaml 
version: '3.0'

expectations:
  population_size: 1000

actions:

  generate_study_population:
    run: cohortextractor:latest generate_cohort --study-definition study_definition
    outputs:
      highly_sensitive:
        cohort: output/input.csv

  run_model:
    run: python:latest python analysis/count_occurrences.py
    needs: [generate_study_population]
    outputs:
      moderately_sensitive:
        log: output/counts.json

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime:

These timestamps are generated and stored using the UTC timezone on the EMIS backend.

Job information

Status
Succeeded
Backend
EMIS
Workspace
emis-smoke-tests
Requested by
Ben Butler-Cole
Branch
master
Force run dependencies
No
Git commit hash
5e2fa0f
Requested actions
  • run_all

Code comparison

Compare the code used in this Job Request