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Job request: 19065

Organisation:
Bennett Institute
Workspace:
ons-cis-short-data-report
ID:
jpdyepu4fsdro7dw
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Iain Dillingham requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    visit_num
    Status:
    Status: Succeeded
    Job identifier:
    2qmjbgjwh6pyx663
  • Action:
    visit_status
    Status:
    Status: Succeeded
    Job identifier:
    4dquriynkxso3zvh
  • Action:
    visit_type
    Status:
    Status: Succeeded
    Job identifier:
    amtbqtvu6mv6nziy
  • Action:
    make_safe
    Status:
    Status: Succeeded
    Job identifier:
    ws2kirprys2fd2wu
  • Action:
    render_report
    Status:
    Status: Succeeded
    Job identifier:
    s67xqdy6437rsxhn

Pipeline

Show project.yaml 
version: "3.0"

expectations:
  population_size: 1000

actions:
  visit_num:
    run: sqlrunner:latest
      --output output/raw/visit_num.csv
      --dummy-data-file analysis/visit_num.csv
      analysis/visit_num.sql
    outputs:
      highly_sensitive:
        rows: output/raw/visit_num.csv

  visit_status:
    run: sqlrunner:latest
      --output output/raw/visit_status.csv
      --dummy-data-file analysis/visit_status.csv
      analysis/visit_status.sql
    outputs:
      highly_sensitive:
        rows: output/raw/visit_status.csv

  visit_type:
    run: sqlrunner:latest
      --output output/raw/visit_type.csv
      --dummy-data-file analysis/visit_type.csv
      analysis/visit_type.sql
    outputs:
      highly_sensitive:
        rows: output/raw/visit_type.csv

  make_safe:
    needs:
      - visit_num
      - visit_status
      - visit_type
    run: python:latest python analysis/make_safe.py
    config:
      tables:
        - from: output/raw/visit_num.csv
          to: output/safe/visit_num.csv
          columns: [num_rows]
        - from: output/raw/visit_status.csv
          to: output/safe/visit_status.csv
          columns: [num_rows]
        - from: output/raw/visit_type.csv
          to: output/safe/visit_type.csv
          columns: [num_rows]
    outputs:
      moderately_sensitive:
        rows: output/safe/*.csv

  render_report:
    needs: [make_safe]
    run: python:latest python analysis/render_report.py
    config:
      tables:
        - output/safe/visit_num.csv
        - output/safe/visit_status.csv
        - output/safe/visit_type.csv
      to: output/safe/report.html
    outputs:
      moderately_sensitive:
        report: output/safe/report.html

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:10:22

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Succeeded
Backend
TPP
Workspace
ons-cis-short-data-report
Requested by
Iain Dillingham
Branch
main
Force run dependencies
Yes
Git commit hash
37f8fcb
Requested actions
  • run_all

Code comparison

Compare the code used in this job request