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Job request: 24455

Organisation:
Bennett Institute
Workspace:
ons-cis-short-data-report
ID:
aw3wahwgmhi5ph2w
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Becky Smith requested one or more actions to be run against the OpenSAFELY test environment.

None of the code was run against real patient data.

Jobs

  • Action:
    visit_num
    Status:
    Status: Failed
    Job identifier:
    qfegla72znz5vpyx
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    visit_status
    Status:
    Status: Failed
    Job identifier:
    rxljokwtse62naj4
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    visit_type
    Status:
    Status: Failed
    Job identifier:
    mlfjsk3ssu6bbpdf
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    make_safe
    Status:
    Status: Failed
    Job identifier:
    prsslykeuk2rzbql
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    render_report
    Status:
    Status: Failed
    Job identifier:
    3j2ntkwyzv6cxnen
    Error:
    internal_error: Internal error: this usually means a platform issue rather than a problem for users to fix. The tech team are automatically notified of these errors and will be investigating.

Pipeline

Show project.yaml 
version: "3.0"

expectations:
  population_size: 1000

actions:
  visit_num:
    run: sqlrunner:latest
      --output output/raw/visit_num.csv
      --dummy-data-file analysis/visit_num.csv
      analysis/visit_num.sql
    outputs:
      highly_sensitive:
        rows: output/raw/visit_num.csv

  visit_status:
    run: sqlrunner:latest
      --output output/raw/visit_status.csv
      --dummy-data-file analysis/visit_status.csv
      analysis/visit_status.sql
    outputs:
      highly_sensitive:
        rows: output/raw/visit_status.csv

  visit_type:
    run: sqlrunner:latest
      --output output/raw/visit_type.csv
      --dummy-data-file analysis/visit_type.csv
      analysis/visit_type.sql
    outputs:
      highly_sensitive:
        rows: output/raw/visit_type.csv

  make_safe:
    needs:
      - visit_num
      - visit_status
      - visit_type
    run: python:latest python analysis/make_safe.py
    config:
      tables:
        - from: output/raw/visit_num.csv
          to: output/safe/visit_num.csv
          columns: [num_rows]
        - from: output/raw/visit_status.csv
          to: output/safe/visit_status.csv
          columns: [num_rows]
        - from: output/raw/visit_type.csv
          to: output/safe/visit_type.csv
          columns: [num_rows]
    outputs:
      moderately_sensitive:
        rows: output/safe/*.csv

  render_report:
    needs: [make_safe]
    run: python:latest python analysis/render_report.py
    config:
      tables:
        - output/safe/visit_num.csv
        - output/safe/visit_status.csv
        - output/safe/visit_type.csv
      to: output/safe/report.html
    outputs:
      moderately_sensitive:
        report: output/safe/report.html

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 46:29:42

These timestamps are generated and stored using the UTC timezone on the TEST backend.

Job request

Status
Failed
Backend
Test
Workspace
ons-cis-short-data-report
Requested by
Becky Smith
Branch
main
Force run dependencies
No
Git commit hash
37f8fcb
Requested actions
  • visit_num
  • visit_status
  • visit_type
  • make_safe
  • render_report

Code comparison

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