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Job request: 24500

Organisation:
Bennett Institute
Workspace:
ons-cis-short-data-report
ID:
itkkwapclcibsgdv
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Becky Smith requested one or more actions to be run against real patient data in the project, within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level various outputs were written to. Researchers can never directly view outputs marked as highly_sensitive ; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

Jobs

  • Action:
    visit_num
    Status:
    Status: Failed
    Job identifier:
    hfqkj3z7cjfdgtlq
    Error:
    internal_error: Internal error: this usually means a platform issue rather than a problem for users to fix. The tech team are automatically notified of these errors and will be investigating.
  • Action:
    visit_status
    Status:
    Status: Failed
    Job identifier:
    yiidm27rlxrsakpk
    Error:
    internal_error: Internal error: this usually means a platform issue rather than a problem for users to fix. The tech team are automatically notified of these errors and will be investigating.
  • Action:
    visit_type
    Status:
    Status: Failed
    Job identifier:
    yxzzqcfatl3s7cby
    Error:
    internal_error: Internal error: this usually means a platform issue rather than a problem for users to fix. The tech team are automatically notified of these errors and will be investigating.
  • Action:
    make_safe
    Status:
    Status: Failed
    Job identifier:
    34z4ssdfdy4tjkxc
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    render_report
    Status:
    Status: Failed
    Job identifier:
    3s7irtpu5zhompsk
    Error:
    dependency_failed: Not starting as dependency failed

Pipeline

Show project.yaml 
version: "3.0"

expectations:
  population_size: 1000

actions:
  visit_num:
    run: sqlrunner:latest
      --output output/raw/visit_num.csv
      --dummy-data-file analysis/visit_num.csv
      analysis/visit_num.sql
    outputs:
      highly_sensitive:
        rows: output/raw/visit_num.csv

  visit_status:
    run: sqlrunner:latest
      --output output/raw/visit_status.csv
      --dummy-data-file analysis/visit_status.csv
      analysis/visit_status.sql
    outputs:
      highly_sensitive:
        rows: output/raw/visit_status.csv

  visit_type:
    run: sqlrunner:latest
      --output output/raw/visit_type.csv
      --dummy-data-file analysis/visit_type.csv
      analysis/visit_type.sql
    outputs:
      highly_sensitive:
        rows: output/raw/visit_type.csv

  make_safe:
    needs:
      - visit_num
      - visit_status
      - visit_type
    run: python:latest python analysis/make_safe.py
    config:
      tables:
        - from: output/raw/visit_num.csv
          to: output/safe/visit_num.csv
          columns: [num_rows]
        - from: output/raw/visit_status.csv
          to: output/safe/visit_status.csv
          columns: [num_rows]
        - from: output/raw/visit_type.csv
          to: output/safe/visit_type.csv
          columns: [num_rows]
    outputs:
      moderately_sensitive:
        rows: output/safe/*.csv

  render_report:
    needs: [make_safe]
    run: python:latest python analysis/render_report.py
    config:
      tables:
        - output/safe/visit_num.csv
        - output/safe/visit_status.csv
        - output/safe/visit_type.csv
      to: output/safe/report.html
    outputs:
      moderately_sensitive:
        report: output/safe/report.html

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime:

These timestamps are generated and stored using the UTC timezone on the TEST backend.

Job information

Status
Failed
Backend
TEST
Workspace
ons-cis-short-data-report
Requested by
Becky Smith
Branch
main
Force run dependencies
Yes
Git commit hash
37f8fcb
Requested actions
  • run_all

Code comparison

Compare the code used in this Job Request