Job request: 23725
- Organisation:
- Bennett Institute
- Workspace:
- pharmacy-first-data-development
- ID:
- 6ahqsjhoab4hjjtw
This page shows the technical details of what happened when the authorised researcher Viveck Kingsley requested one or more actions to be run against real patient data in the project, within a secure environment.
By cross-referencing the list of jobs with the
pipeline section below, you can infer what
security level
various outputs were written to. Researchers can never directly
view outputs marked as
highly_sensitive
;
they can only request that code runs against them. Outputs
marked as
moderately_sensitive
can be viewed by an approved researcher by logging into a highly
secure environment. Only outputs marked as
moderately_sensitive
can be requested for release to the public, via a controlled
output review service.
Jobs
-
- Job identifier:
-
qy5wxdwurxo6wxgj
-
- Job identifier:
-
f6l67h3goey5aarn
Pipeline
Show project.yaml
version: '3.0'
# Ignore this`expectation` block. It is required but not used, and will be removed in future versions.
expectations:
population_size: 1000
actions:
generate_pf_codes_data_development:
run: >
ehrql:v1 generate-dataset analysis/dataset_definition_pf_data_development.py
--test-data-file analysis/test_dataset_definition_pf_data_development.py
--output output/data_development/pf_codes_data_development.arrow
outputs:
highly_sensitive:
dataset: output/data_development/pf_codes_data_development.arrow
generate_med_status_data_development:
run: >
ehrql:v1 generate-dataset analysis/dataset_definition_med_status_data_development.py
--output output/data_development/med_status_data_development.arrow
outputs:
highly_sensitive:
dataset: output/data_development/med_status_data_development.arrow
generate_measures_pf_codes:
run: >
ehrql:v1 generate-measures analysis/measures_definition_clinical_codes.py
--output output/clinical_codes/code_counts_measures.csv
outputs:
moderately_sensitive:
measure: output/clinical_codes/code_counts_measures.csv
data_development_med_status:
run: r:latest analysis/data_development_med_status_counts.R
needs: [generate_med_status_data_development]
outputs:
moderately_sensitive:
dataset: output/data_development/med_status_counts.csv
data_development_pf_code_distinct:
run: r:latest analysis/data_development_pf_code_count_distinct.R
needs: [generate_pf_codes_data_development]
outputs:
moderately_sensitive:
dataset: output/data_development/pf_codes_count_distinct.csv
data_development_pf_code_events:
run: r:latest analysis/data_development_pf_code_count_events.R
needs: [generate_pf_codes_data_development]
outputs:
moderately_sensitive:
dataset: output/data_development/pf_codes_count_events.csv
data_development_pf_codes_pathways:
run: r:latest analysis/data_development_pf_code_count_pathways.R
needs: [generate_pf_codes_data_development]
outputs:
moderately_sensitive:
dataset: output/data_development/pf_codes_count_pathways.csv
data_development_pf_codes_combine:
run: r:latest analysis/data_development_pf_code_count_combine.R
needs: [data_development_pf_code_distinct, data_development_pf_code_events, data_development_pf_codes_pathways]
outputs:
moderately_sensitive:
dataset: output/data_development/pf_codes_count_summary.csv
Timeline
-
Created:
-
Started:
-
Finished:
-
Runtime: 29:57:59
These timestamps are generated and stored using the UTC timezone on the TPP backend.
Job information
- Status
-
Failed
- Backend
- TPP
- Workspace
- pharmacy-first-data-development
- Requested by
- Viveck Kingsley
- Branch
- main
- Force run dependencies
- Yes
- Git commit hash
- 0a1b16c
- Requested actions
-
-
data_development_med_status
-
Code comparison
Compare the code used in this Job Request