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Job request: 12143

Organisation:
Bennett Institute
Workspace:
test-age-distribution
ID:
2pn44vc226lneljc
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Chris Yeung requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    generate_dataset
    Status:
    Status: Failed
    Job identifier:
    dl22opedn2lbftop
    Error:
    Object of type dict_values is not JSON serializable

Pipeline

Show project.yaml 
version: "3.0"

expectations:
  population_size: 1000

actions:
  generate_dataset:
    run: >
      databuilder:v0.48.0
        generate-dataset
        --output output/dataset.csv
        --dummy-data-file dummy_output/dataset.csv
        analysis/dataset_definition.py
    outputs:
      highly_sensitive:
        dataset: output/dataset.csv

  count_by_age:
    run: >
      python:latest
        python analysis/count_by_age.py
    needs: [generate_dataset]
    outputs:
      moderately_sensitive:
        count: output/count_by_age.csv

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:00:33

These timestamps are generated and stored using the UTC timezone on the GRAPHNET-TEST backend.

Job request

Status
Failed
Backend
Graphnet TEST
Workspace
test-age-distribution
Requested by
Chris Yeung
Branch
main
Force run dependencies
No
Git commit hash
af04fcf
Requested actions
  • generate_dataset

Code comparison

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