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Job request: 25658

Organisation:
Bennett Institute
Workspace:
tpp-counts-by-year
ID:
4uhk6xlg5djza52g
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Andrea Schaffer requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

Pipeline

Show project.yaml 
version: '4.0'

actions:
  measures_patients:
    run: ehrql:v1 generate-measures analysis/measures_patients.py 
      --output output/measures/measures_patients.csv
    outputs:
      moderately_sensitive:
        measure_csv: output/measures/measures_patients.csv

  measures_practices:
    run: ehrql:v1 generate-measures analysis/measures_practices.py 
      --output output/measures/measures_practices.csv.gz
    outputs:
      highly_sensitive:
        measure_csv: output/measures/measures_practices.csv.gz

  checks:
    run: r:latest analysis/0_tpp_checks.R
    needs: [measures_practices]
    outputs:
      moderately_sensitive:
        csv1: output/processed/tpp_practices_check_2009.csv
        csv2: output/processed/tpp_practices_check_2025.csv

  counts_year:
    run: r:latest analysis/1_tpp_counts_by_year.R
    needs: [measures_patients, measures_practices]
    outputs:
      moderately_sensitive:
        csv1: output/processed/tpp_counts_by_year.csv
        
  counts_practices:
    run: r:latest analysis/2_tpp_counts_practices.R
    needs: [measures_patients, measures_practices]
    outputs:
      moderately_sensitive:
        csv1: output/processed/tpp_practices_years.csv
        png: output/processed/figures/practices*.png
        
  run_pre_filtering_only:
    run: r:latest analysis/3a_prefiltering.R
    needs: [counts_year, counts_practices]
    outputs:
      moderately_sensitive:
        csv1: output/prefiltering/tpp_counts_pre_filtering.csv
        csv2: output/prefiltering/tpp_practices_pre_filtering.csv

  # run_post_filtering_only:
  #   run: r:latest analysis/3b_postfiltering.R
  #   needs: [processing]
  #   outputs:
  #     moderately_sensitive:
  #       csv: output/postfiltering/tpp_counts_post_filtering.csv

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:00:28

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Succeeded
Backend
TPP
Workspace
tpp-counts-by-year
Requested by
Andrea Schaffer
Branch
main
Force run dependencies
No
Git commit hash
0938d02
Requested actions
  • counts_practices

Code comparison

Compare the code used in this job request