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Job request: 13259

Organisation:
Bennett Institute
Workspace:
tpp-ctv3-codes
ID:
y7t2mccfo56eggqg
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Becky Smith requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

Pipeline

Show project.yaml 
version: "3.0"

expectations:
  population_size: 1000

actions:
  extract_ctv3_dictionary:
    run: >
      sqlrunner:latest
        --output output/ctv3_dictionary.csv
        analysis/extract_ctv3_dictionary.sql
    outputs:
      moderately_sensitive:
        rows: output/ctv3_dictionary.csv

  gzip_ctv3_dictionary:
    run: python:latest gzip output/ctv3_dictionary.csv
    needs: [extract_ctv3_dictionary]
    outputs:
      moderately_sensitive:
        gz_file: output/ctv3_dictionary.csv.gz

  extract_ctv3_hierarchy:
    run: >
      sqlrunner:latest
        --output output/ctv3_hierarchy.csv
        analysis/extract_ctv3_hierarchy.sql
    outputs:
      moderately_sensitive:
        rows: output/ctv3_hierarchy.csv
  
  gzip_ctv3_hierarchy:
    run: python:latest gzip output/ctv3_hierarchy.csv
    needs: [extract_ctv3_hierarchy]
    outputs:
      moderately_sensitive:
        gz_file: output/ctv3_hierarchy.csv.gz

  check_ctv3_events:
    run: >
      sqlrunner:latest
        --output output/coded_events_with_missing_ctv3_codes.csv
        analysis/check_ctv3_events.sql
    outputs:
      highly_sensitive:
        rows: output/coded_events_with_missing_ctv3_codes.csv

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:05:14

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Succeeded
Backend
TPP
Workspace
tpp-ctv3-codes
Requested by
Becky Smith
Branch
main
Force run dependencies
No
Git commit hash
4fde8e6
Requested actions
  • gzip_ctv3_dictionary
  • gzip_ctv3_hierarchy

Code comparison

Compare the code used in this job request