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Job request: 13259

Organisation:
Bennett Institute
Workspace:
tpp-ctv3-codes
ID:
y7t2mccfo56eggqg
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Becky Smith requested one or more actions to be run against real patient data in the project, within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level various outputs were written to. Researchers can never directly view outputs marked as highly_sensitive ; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

Jobs

Pipeline

Show project.yaml 
version: "3.0"

expectations:
  population_size: 1000

actions:
  extract_ctv3_dictionary:
    run: >
      sqlrunner:latest
        --output output/ctv3_dictionary.csv
        analysis/extract_ctv3_dictionary.sql
    outputs:
      moderately_sensitive:
        rows: output/ctv3_dictionary.csv

  gzip_ctv3_dictionary:
    run: python:latest gzip output/ctv3_dictionary.csv
    needs: [extract_ctv3_dictionary]
    outputs:
      moderately_sensitive:
        gz_file: output/ctv3_dictionary.csv.gz

  extract_ctv3_hierarchy:
    run: >
      sqlrunner:latest
        --output output/ctv3_hierarchy.csv
        analysis/extract_ctv3_hierarchy.sql
    outputs:
      moderately_sensitive:
        rows: output/ctv3_hierarchy.csv
  
  gzip_ctv3_hierarchy:
    run: python:latest gzip output/ctv3_hierarchy.csv
    needs: [extract_ctv3_hierarchy]
    outputs:
      moderately_sensitive:
        gz_file: output/ctv3_hierarchy.csv.gz

  check_ctv3_events:
    run: >
      sqlrunner:latest
        --output output/coded_events_with_missing_ctv3_codes.csv
        analysis/check_ctv3_events.sql
    outputs:
      highly_sensitive:
        rows: output/coded_events_with_missing_ctv3_codes.csv

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:05:14

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job information

Status
Succeeded
Backend
TPP
Workspace
tpp-ctv3-codes
Requested by
Becky Smith
Branch
main
Force run dependencies
No
Git commit hash
4fde8e6
Requested actions
  • gzip_ctv3_dictionary
  • gzip_ctv3_hierarchy

Code comparison

Compare the code used in this Job Request