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Job request: 17223

Organisation:
Bennett Institute
Workspace:
tpp-database-history
ID:
sastjnyks7zr4lde
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Iain Dillingham requested one or more actions to be run against real patient data in the project, within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level various outputs were written to. Researchers can never directly view outputs marked as highly_sensitive ; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

Pipeline

Show project.yaml 
version: "3.0"

expectations:
  population_size: 1000

actions:
  query:
    run: >
      sqlrunner:latest
        --dummy-data-file output/generate_dummy_rows/dummy_rows.csv.gz
        --output output/query/rows.csv.gz
        analysis/query.sql
    outputs:
      highly_sensitive:
        rows: output/query/rows.csv.gz

  aggregate:
    needs: [query]
    run: python:latest python -m analysis.aggregate
    outputs:
      moderately_sensitive:
        aggregates: output/aggregate/*_by_*.csv.gz

  plot:
    needs: [aggregate]
    run: python:latest python -m analysis.plot
    outputs:
      moderately_sensitive:
        plots: output/plot/*.png

  render_report:
    needs: [plot]
    run: python:latest python -m analysis.render_report
    outputs:
      moderately_sensitive:
        report: output/render_report/report.html

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime:

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job information

Status
Failed 
JobRequestError: aggregate failed on a previous run and must be re-run
Backend
TPP
Workspace
tpp-database-history
Requested by
Iain Dillingham
Branch
main
Force run dependencies
No
Git commit hash
5f6d3d2
Requested actions
  • run_all

Code comparison

Compare the code used in this Job Request