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Job request: 17223

Organisation:
Bennett Institute
Workspace:
tpp-database-history
ID:
sastjnyks7zr4lde
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Iain Dillingham requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Pipeline

Show project.yaml 
version: "3.0"

expectations:
  population_size: 1000

actions:
  query:
    run: >
      sqlrunner:latest
        --dummy-data-file output/generate_dummy_rows/dummy_rows.csv.gz
        --output output/query/rows.csv.gz
        analysis/query.sql
    outputs:
      highly_sensitive:
        rows: output/query/rows.csv.gz

  aggregate:
    needs: [query]
    run: python:latest python -m analysis.aggregate
    outputs:
      moderately_sensitive:
        aggregates: output/aggregate/*_by_*.csv.gz

  plot:
    needs: [aggregate]
    run: python:latest python -m analysis.plot
    outputs:
      moderately_sensitive:
        plots: output/plot/*.png

  render_report:
    needs: [plot]
    run: python:latest python -m analysis.render_report
    outputs:
      moderately_sensitive:
        report: output/render_report/report.html

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime:

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed 
JobRequestError: aggregate failed on a previous run and must be re-run
Backend
TPP
Workspace
tpp-database-history
Requested by
Iain Dillingham
Branch
main
Force run dependencies
No
Git commit hash
5f6d3d2
Requested actions
  • run_all

Code comparison

Compare the code used in this job request