Skip to content

Job request: 23252

Organisation:
Bennett Institute
Workspace:
tpp-database-import-dates
ID:
22zbyy5svomsbhlu
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Becky Smith requested one or more actions to be run against real patient data in the project, within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level various outputs were written to. Researchers can never directly view outputs marked as highly_sensitive ; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

Jobs

  • Action:
    query
    Status:
    Status: Succeeded
    Job identifier:
    jj2f2r7mkkqtqfxq
  • Action:
    latest_import_dates
    Status:
    Status: Succeeded
    Job identifier:
    7hj4nsmhughz5cud
  • Action:
    plot
    Status:
    Status: Succeeded
    Job identifier:
    imgvordttfre7zby
  • Action:
    render_report
    Status:
    Status: Succeeded
    Job identifier:
    az2xvasj6nbvxozu

Pipeline

Show project.yaml 
version: "3.0"

expectations:
  population_size: 1000

actions:
  query:
    run: >
      sqlrunner:latest
        --dummy-data-file analysis/dummy_rows.csv.gz
        --output output/query/rows.csv.gz
        --log-file output/query/log.json
        analysis/query.sql
    outputs:
      highly_sensitive:
        rows: output/query/rows.csv.gz
      moderately_sensitive:
        log: output/query/log.json

  latest_import_dates:
    needs: [query]
    run: python:latest python -m analysis.latest_import_dates
    outputs:
      moderately_sensitive:
        latest_import_dates: output/latest_import_dates/latest_import_dates.csv

  plot:
    needs: [query]
    run: python:latest python -m analysis.plot
    outputs:
      moderately_sensitive:
        latest_import_dates: output/plot/plot.png

  render_report:
    needs: [query, latest_import_dates, plot]
    run: python:latest python -m analysis.render_report
    outputs:
      moderately_sensitive:
        report: output/render_report/report.html

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:24:52

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job information

Status
Succeeded
Backend
TPP
Workspace
tpp-database-import-dates
Requested by
Becky Smith
Branch
main
Force run dependencies
Yes
Git commit hash
051094b
Requested actions
  • query
  • latest_import_dates
  • plot
  • render_report

Code comparison

Compare the code used in this Job Request