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Job request: 27349

Organisation:
Bennett Institute
Workspace:
tpp-database-import-dates
ID:
fnb4wwvyrp37axk2
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Alice Wong requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    latest_import_dates
    Status:
    Pending
    Job identifier:
    5n57e7cgowqip6ib
    Status message:
    waiting_on_dependencies: Waiting on dependencies
  • Action:
    plot
    Status:
    Pending
    Job identifier:
    34rwwdtjkwq36g5g
    Status message:
    waiting_on_dependencies: Waiting on dependencies
  • Action:
    query
    Status:
    Pending
    Job identifier:
    xqpypfkxeyedbxi7
    Status message:
    waiting_on_db_workers: Waiting on available database workers
  • Action:
    render_report
    Status:
    Pending
    Job identifier:
    mts6rfimu63ynjoe
    Status message:
    waiting_on_dependencies: Waiting on dependencies

Pipeline

Show project.yaml 
version: "5.0"

actions:
  query:
    run: >
      sqlrunner:v1
        --dummy-data-file analysis/dummy_rows.csv.gz
        --output output/query/rows.csv.gz
        --log-file output/query/log.json
        analysis/query.sql
    outputs:
      highly_sensitive:
        rows: output/query/rows.csv.gz
      moderately_sensitive:
        log: output/query/log.json

  latest_import_dates:
    needs: [query]
    run: python:v2 python -m analysis.latest_import_dates
    outputs:
      moderately_sensitive:
        latest_import_dates: output/files_for_release/latest_import_dates.csv

  plot:
    needs: [query]
    run: python:v2 python -m analysis.plot
    outputs:
      moderately_sensitive:
        latest_import_dates: output/plot/plot.png

  render_report:
    needs: [query, latest_import_dates, plot]
    run: python:v2 python -m analysis.render_report
    outputs:
      moderately_sensitive:
        report: output/files_for_release/report.html

Job statistics

Status Count Percentage
Pending 4 100%
Running 0 0%
Succeeded 0 0%
Failed 0 0%

0 / 4 (0%) complete

Timeline

  • Created:

  • Runtime:

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Pending
Backend
TPP
Workspace
tpp-database-import-dates
Requested by
Alice Wong
Branch
main
Force run dependencies
Yes
Git commit hash
6715605
Requested actions
  • run_all

Code comparison

Compare the code used in this job request