Job request: 14556
This page shows the technical details of what happened when authorised researcher Peter Inglesby requested one or more actions to be run against real patient data in the project, within a secure environment.
By cross-referencing the indicated Requested Actions with the
Pipeline section below, you can infer what
various outputs were written to. Outputs marked as
can never be viewed directly by a researcher; they can only
request that code runs against them. Outputs marked as
can be viewed by an approved researcher by logging into a highly
secure environment. Only outputs marked as
can be requested for release to the public, via a controlled
output review service.
version: "3.0" expectations: population_size: 1000 actions: query: run: > sqlrunner:latest --output output/rows.csv analysis/query.sql outputs: moderately_sensitive: rows: output/rows.csv make-html-reports: # --execute # execute notebooks before converting them to HTML reports # --no-input # exclude input cells and output prompts from HTML reports # --to=html # convert notebooks to HTML reports (not e.g. to PDF reports) # --template basic # use the basic (unstyled) template for HTML reports # --output-dir=output # write HTML reports to the `output` directory run: > python:latest jupyter nbconvert --execute --no-input --to=html --template basic --output-dir=output analysis/*.ipynb needs: - query outputs: moderately_sensitive: reports: output/*.html
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