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Job request: 19948

Organisation:
Bennett Institute
Workspace:
tpp-database-schema
ID:
2hrljoulg45mouxg

This page shows the technical details of what happened when authorised researcher Iain Dillingham requested one or more actions to be run against real patient data in the project, within a secure environment.

By cross-referencing the indicated Requested Actions with the Pipeline section below, you can infer what security level various outputs were written to. Outputs marked as highly_sensitive can never be viewed directly by a researcher; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

Jobs

Pipeline

Show project.yaml
version: "3.0"

expectations:
  population_size: 1000

actions:
  query:
    run: >
      sqlrunner:latest
        --output output/rows.csv
        --dummy-data-file analysis/dummy_rows.csv
        --log-file output/log.json
        analysis/query.sql
    outputs:
      moderately_sensitive:
        rows: output/rows.csv
        log: output/log.json

  make-html-reports:
    # --execute
    #   execute notebooks before converting them to HTML reports
    # --no-input
    #   exclude input cells and output prompts from HTML reports
    # --to=html
    #   convert notebooks to HTML reports (not e.g. to PDF reports)
    # --template basic
    #   use the basic (unstyled) template for HTML reports
    # --output-dir=output
    #   write HTML reports to the `output` directory
    run: >
      python:latest jupyter nbconvert
        --execute
        --no-input
        --to=html
        --template basic
        --output-dir=output
        analysis/*.ipynb
    needs:
      - query
    outputs:
      moderately_sensitive:
        reports: output/*.html

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:00:15

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job information

Status
Succeeded
Backend
TPP
Requested by
Iain Dillingham
Branch
main
Force run dependencies
No
Git commit hash
56a8e11
Requested actions
  • make-html-reports

Code comparison

Compare the code used in this Job Request