Job request: 23743
- Organisation:
- Bennett Institute
- Workspace:
- tpp-database-schema
- ID:
- zpvs3fopkciscezw
This page shows the technical details of what happened when the authorised researcher Tom Ward requested one or more actions to be run against real patient data in the project, within a secure environment.
By cross-referencing the list of jobs with the
pipeline section below, you can infer what
security level
various outputs were written to. Researchers can never directly
view outputs marked as
highly_sensitive
;
they can only request that code runs against them. Outputs
marked as
moderately_sensitive
can be viewed by an approved researcher by logging into a highly
secure environment. Only outputs marked as
moderately_sensitive
can be requested for release to the public, via a controlled
output review service.
Jobs
-
- Job identifier:
-
dlrj6gyqe7rksinq
Pipeline
Show project.yaml
version: "3.0"
expectations:
population_size: 1000
actions:
query:
run: >
sqlrunner:latest
--output output/rows.csv
--log-file output/log.json
analysis/query.sql
outputs:
moderately_sensitive:
rows: output/rows.csv
log: output/log.json
data_dictionary_query:
run: >
sqlrunner:latest
--output output/data_dictionary.csv
--log-file output/data_dictionary_log.json
analysis/data_dictionary_query.sql
outputs:
moderately_sensitive:
rows: output/data_dictionary.csv
log: output/data_dictionary_log.json
make-html-reports:
# --execute
# execute notebooks before converting them to HTML reports
# --no-input
# exclude input cells and output prompts from HTML reports
# --to=html
# convert notebooks to HTML reports (not e.g. to PDF reports)
# --template basic
# use the basic (unstyled) template for HTML reports
# --output-dir=output
# write HTML reports to the `output` directory
run: >
python:latest jupyter nbconvert
--execute
--no-input
--to=html
--template basic
--output-dir=output
analysis/*.ipynb
needs:
- query
outputs:
moderately_sensitive:
reports: output/*.html
categorical_columns:
run: >
sqlrunner:latest
--output output/results_categorical_columns.csv
--dummy-data-file analysis/dummy_results.csv
analysis/query_tpp_categorical_columns.sql
outputs:
moderately_sensitive:
results: output/results_categorical_columns.csv
Timeline
-
Created:
-
Started:
-
Finished:
-
Runtime: 00:13:00
These timestamps are generated and stored using the UTC timezone on the TPP backend.
Job information
- Status
-
Succeeded
- Backend
- TPP
- Workspace
- tpp-database-schema
- Requested by
- Tom Ward
- Branch
- main
- Force run dependencies
- Yes
- Git commit hash
- b19cdf4
- Requested actions
-
-
categorical_columns
-
Code comparison
Compare the code used in this Job Request