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Job request: 25857

Organisation:
Bennett Institute
Workspace:
tpp-patient-population
ID:
pioseexf45g6pl3l
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Becky Smith requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

Pipeline

Show project.yaml 
version: '5.0'

actions:
  extract_population_size:
    run: >
      sqlrunner:v1
        --output output/population_size.csv
        --dummy-data-file analysis/dummy.csv
        analysis/extract_population_size_excl_t1oo.sql
    outputs:
      moderately_sensitive:
        rows: output/population_size.csv
  
  extract_population_size_including_t1oo:
    run: >
      sqlrunner:v1
        --output checks/population_size_including_t1oo.csv
        analysis/extract_population_size_incl_t1oo.sql
    outputs:
      moderately_sensitive:
        rows: checks/population_size_including_t1oo.csv

  extract_population_size_with_gp_activation_filtering:
    run: >
      sqlrunner:v1
        --output output/population_size_gp_activation_filtered.csv
        analysis/extract_population_size_excl_t1oo_gp_activation_filtered.sql
    outputs:
      moderately_sensitive:
        rows: output/population_size_gp_activation_filtered.csv

  extract_population_size_with_ehrql:
    run: >
      ehrql:v1
        generate-measures analysis/ehrql_extract_population_size.py
        --output checks/ehrql_population_size.csv
    outputs:
      moderately_sensitive:
        rows: checks/ehrql_population_size.csv

  extract_population_size_with_ehrql_including_gp_activation_filtering:
    run: >
      ehrql:v1
        generate-measures analysis/ehrql_extract_population_size.py
        --output checks/ehrql_population_size_with_gp_activation_filtering.csv
    outputs:
      moderately_sensitive:
        rows: checks/ehrql_population_size_with_gp_activation_filtering.csv

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:03:23

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Succeeded
Backend
TPP
Workspace
tpp-patient-population
Requested by
Becky Smith
Branch
main
Force run dependencies
No
Git commit hash
4aea3c8
Requested actions
  • extract_population_size
  • extract_population_size_including_t1oo
  • extract_population_size_with_gp_activation_filtering
  • extract_population_size_with_ehrql_including_gp_activation_filtering

Code comparison

Compare the code used in this job request