Skip to content

Job request: 21047

Organisation:
Bennett Institute
Workspace:
tpp-vaccination-names
ID:
4lbodvhie6fnskrd
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Will Hulme requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    extract_covid_vaccination_name_frequency
    Status:
    Failed
    Job identifier:
    neapyjtzy54v44b7
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    extract_vaccination_names
    Status:
    Failed
    Job identifier:
    wc6iaejg3lld3dqh
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    vaccination_names_html
    Status:
    Failed
    Job identifier:
    wy3xzerk4bmc4zi4
    Error:
    dependency_failed: Not starting as dependency failed

Pipeline

Show project.yaml 
version: "3.0"

expectations:
  population_size: 1000

actions:
  extract_vaccination_names:
    run: >
      sqlrunner:latest
        --output output/vaccination_names.csv
        --dummy-data-file analysis/dummy.csv
        analysis/extract_vaccination_names.sql
    outputs:
      moderately_sensitive:
        rows: output/vaccination_names.csv

  vaccination_names_html:
    needs: [extract_vaccination_names]
    run: >
      python:latest 
        jupyter nbconvert analysis/vaccination_names.ipynb 
        --execute 
        --to html 
        --no-input 
        --output-dir=/workspace/output 
        --ExecutePreprocessor.timeout=86400
    outputs:
      moderately_sensitive:
        html: output/vaccination_names.html
        
  extract_covid_vaccination_name_frequency:
    run: >
      sqlrunner:latest
        --output output/covid_vaccination_name_frequency.csv
        --dummy-data-file analysis/dummy_vaccination_name_frequency.csv
        analysis/extract_covid_vaccination_name_frequency.sql
    outputs:
      moderately_sensitive:
        rows: output/covid_vaccination_name_frequency.csv

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:00:17

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
tpp-vaccination-names
Requested by
Will Hulme
Branch
main
Force run dependencies
No
Git commit hash
ddb68d8
Requested actions
  • extract_vaccination_names
  • vaccination_names_html
  • extract_covid_vaccination_name_frequency

Code comparison

Compare the code used in this job request