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Job request: 27191

Organisation:
University of Nottingham
Workspace:
optifit_cohort_definition
ID:
m2qwv6gviw4uq6h2
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher James Chean Khun Ng requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    comparator_analysis
    Status:
    Pending
    Job identifier:
    57hwqz2tusza2yzz
    Status message:
    waiting_on_dependencies: Waiting on dependencies
  • Action:
    analysis_value_null
    Status:
    Pending
    Job identifier:
    w5zjz4dgxlsyaqwd
    Status message:
    waiting_on_dependencies: Waiting on dependencies
  • Action:
    first_analysis
    Status:
    Pending
    Job identifier:
    jpfkolu4ggnf6edq
    Status message:
    waiting_on_dependencies: Waiting on dependencies
  • Action:
    generate_dataset
    Status:
    Pending
    Job identifier:
    3fxvtevcpokgyhgd
    Status message:
    waiting_db_maintenance: Waiting for database to finish maintenance
  • Action:
    generate_dataset_value_null
    Status:
    Pending
    Job identifier:
    pxni6ao6pj7mfrsw
    Status message:
    waiting_db_maintenance: Waiting for database to finish maintenance

Pipeline

Show project.yaml 
version: '5.0'

actions:
  generate_dataset:
    run: ehrql:v1 generate-dataset analysis/dataset_definition.py --output output/dataset.csv.gz
    outputs:
      highly_sensitive:
        dataset: output/dataset.csv.gz

  first_analysis:
    run: r:v2 analysis/first_analysis.R
    needs: [generate_dataset]
    outputs:
      moderately_sensitive:
        fitn: output/fitn.png
        fitp: output/fitp.png
        tbl_all: output/tbl1c.html
        tbl_no_zero: output/tblc_no_zero.html
        tbl_zero: output/tbl_zero.html

  comparator_analysis:
    run: r:v2 analysis/comparator_analysis.R
    needs: [generate_dataset]
    outputs:
      moderately_sensitive:
        tbl_comp: output/tbl_comp_combined.html

  generate_dataset_value_null:
    run: ehrql:v1 generate-dataset analysis/dataset_definition_value_null.py --output output/dataset_value_null.csv.gz
    outputs:
      highly_sensitive:
        dataset: output/dataset_value_null.csv.gz

  analysis_value_null:
    run: r:v2 analysis/analysis_value_null.R
    needs: [generate_dataset_value_null]
    outputs:
      moderately_sensitive:
        tbl_comp: output/tbl_null.html

Job statistics

Status Count Percentage
Pending 5 100%
Running 0 0%
Succeeded 0 0%
Failed 0 0%

0 / 5 (0%) complete

Timeline

  • Created:

  • Runtime:

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Pending
Backend
TPP
Workspace
optifit_cohort_definition
Requested by
James Chean Khun Ng
Branch
main
Force run dependencies
Yes
Git commit hash
5d53339
Requested actions
  • first_analysis
  • comparator_analysis
  • generate_dataset_value_null
  • analysis_value_null

Code comparison

Compare the code used in this job request