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Job request: 858

Organisation:
The London School of Hygiene & Tropical Medicine
Workspace:
post-admissions-admissions-kb
ID:
3xcl76f2czxj7wn4
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Krishnan Bhaskaran requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    generate_study_population
    Status:
    Status: Failed
    Job identifier:
    ysfri3yyqjtswywt
    Error:
    nonzero_exit: Job exited with an error code
  • Action:
    create_dataset
    Status:
    Status: Failed
    Job identifier:
    4fianqbqomktsksq
    Error:
    dependency_failed: Not starting as dependency failed

Pipeline

Show project.yaml 
version: '3.0'

expectations:
  population_size: 1000

actions:

  generate_study_population:
    run: cohortextractor:latest generate_cohort --study-definition study_definition
    outputs:
      highly_sensitive:
        cohort: output/input.csv

  create_dataset:
    run: stata-mp:latest analysis/cr_create_analysis_dataset.do 
    needs: [generate_study_population]
    outputs:
      highly_sensitive:
        cohort: analysis/cr_create_analysis_dataset.dta
      moderately_sensitive:
        log: analysis/output/cr_create_analysis_dataset.log

  run_model:
    run: stata-mp:latest analysis/model.do
    needs: [generate_study_population]
    outputs:
      moderately_sensitive:
        log: logs/model.log

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 01:02:49

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
post-admissions-admissions-kb
Requested by
Krishnan Bhaskaran
Branch
master
Force run dependencies
No
Git commit hash
2a442f4
Requested actions
  • generate_study_population
  • create_dataset

Code comparison

Compare the code used in this job request