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Job request: 7501

Organisation:
University of Nottingham
Workspace:
postopcovid
ID:
36zwxi5ipdacp23y
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Colin Crooks requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    describe
    Status:
    Status: Failed
    Job identifier:
    gp6fhpgpskzjbetu
    Error:
    nonzero_exit: Job exited with error code 1

Pipeline

Show project.yaml 
version: '3.0'

expectations:
  population_size: 1000

actions:

  generate_study_population:
    run: cohortextractor:latest generate_cohort --study-definition study_definition
    outputs:
      highly_sensitive:
        cohort: output/input.csv

  describe:
    run: r:latest analysis/report.R
    needs: [generate_study_population]
    outputs:
      moderately_sensitive:
        survival_figures: output/plot_*.png
        covid_cox_models: output/*_model.csv
        tables: output/*.html

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:00:39

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
postopcovid
Requested by
Colin Crooks
Branch
main
Force run dependencies
No
Git commit hash
4c5ca09
Requested actions
  • describe

Code comparison

Compare the code used in this job request