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Job request: 4537

Organisation:
Bennett Institute
Workspace:
primary-care-covid-codes-research
ID:
y2kp2eqqiwknlvqd
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Colm Andrews requested one or more actions to be run against real patient data in the project, within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level various outputs were written to. Researchers can never directly view outputs marked as highly_sensitive ; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

Jobs

  • Action:
    counts
    Status:
    Status: Succeeded
    Job identifier:
    fcrshiyvk64qd2fn
  • Action:
    freq_plots
    Status:
    Status: Succeeded
    Job identifier:
    mxaoqjjpnu35ped6

Pipeline

Show project.yaml 
version: '3.0'

expectations:
  population_size: 10000

actions:

  generate_cohort:
    run: cohortextractor:latest generate_cohort --study-definition study_definition
    outputs:
      highly_sensitive:
        cohort: output/input.csv

  counts:
    run: python:latest python analysis/counts.py
    needs: [generate_cohort]
    outputs:
      moderately_sensitive: 
        tabdata: output/tabledata.csv
        cohort_2: output/codecounts_week.csv
        
  freq_plots:
    run: python:latest python analysis/freq_plot.py
    needs: [counts]
    outputs:
      moderately_sensitive:  
        plots: output/plots.svg
#        figs: output/figs.svg

  km_plots:
    run: python:latest python analysis/km_plot.py
    needs: [generate_cohort]
    outputs:
      moderately_sensitive:  
        figs: output/figs.svg

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:05:25

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job information

Status
Succeeded
Backend
TPP
Workspace
primary-care-covid-codes-research
Requested by
Colm Andrews
Branch
master
Force run dependencies
No
Git commit hash
eefd1df
Requested actions
  • counts
  • freq_plots

Code comparison

Compare the code used in this Job Request