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Job request: 4537

Organisation:
Bennett Institute
Workspace:
primary-care-covid-codes-research
ID:
y2kp2eqqiwknlvqd
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Colm Andrews requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    counts
    Status:
    Status: Succeeded
    Job identifier:
    fcrshiyvk64qd2fn
  • Action:
    freq_plots
    Status:
    Status: Succeeded
    Job identifier:
    mxaoqjjpnu35ped6

Pipeline

Show project.yaml 
version: '3.0'

expectations:
  population_size: 10000

actions:

  generate_cohort:
    run: cohortextractor:latest generate_cohort --study-definition study_definition
    outputs:
      highly_sensitive:
        cohort: output/input.csv

  counts:
    run: python:latest python analysis/counts.py
    needs: [generate_cohort]
    outputs:
      moderately_sensitive: 
        tabdata: output/tabledata.csv
        cohort_2: output/codecounts_week.csv
        
  freq_plots:
    run: python:latest python analysis/freq_plot.py
    needs: [counts]
    outputs:
      moderately_sensitive:  
        plots: output/plots.svg
#        figs: output/figs.svg

  km_plots:
    run: python:latest python analysis/km_plot.py
    needs: [generate_cohort]
    outputs:
      moderately_sensitive:  
        figs: output/figs.svg

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:05:25

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Succeeded
Backend
TPP
Workspace
primary-care-covid-codes-research
Requested by
Colm Andrews
Branch
master
Force run dependencies
No
Git commit hash
eefd1df
Requested actions
  • counts
  • freq_plots

Code comparison

Compare the code used in this job request