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Job request: 26879

Organisation:
NICE
Workspace:
nice001-simulation-cohort
ID:
bby4gwm2yw7lllir
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Xi Xiong requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    calibrate_men
    Status:
    Succeeded
    Job identifier:
    jwsankb3vglmkc3h
  • Action:
    calibrate_women
    Status:
    Succeeded
    Job identifier:
    e4dw6dkrnmebb3if

Pipeline

Show project.yaml 
version: '5.0'

actions:
  generate_dataset:
    run: >
      ehrql:v1 generate-dataset 
      analysis/dataset_definition_qfracture.py 
      --output output/qfracture_variables.csv
    outputs:
      highly_sensitive:
        dataset: output/qfracture_variables.csv

  identify_dxa_eligible:
    run: stata-mp:v1 analysis/identify_dxa_eligible.do
    needs: [generate_dataset]
    outputs:
      highly_sensitive:
        cohort_with_dxa_flags: output/qfracture_cohort_with_dxa_flags.dta
        dxa_eligible_population: output/dxa_eligible_population.dta

  create_table1_dxa:
    run: stata-mp:v1 analysis/table1_dxa.do
    needs: [identify_dxa_eligible]
    outputs:
      moderately_sensitive:
        table1_qfracture: output/table1_dxa.csv  

  calibrate_women:
    run: stata-mp:v1 analysis/women_calibration_weighting.do
    needs: [identify_dxa_eligible]
    outputs:
      highly_sensitive:
        patient_weights: output/dxa_eligible_women_calibration_weights.dta
      moderately_sensitive:
        balance: output/women_calibration_balance.csv
        weight_diagnostics: output/women_calibration_weight_diagnostics.csv
        missingness_exact: output/women_calibration_missingness.csv
        weighted_missingness_exact: output/women_calibration_weighted_missingness.csv
        feasibility: output/women_calibration_feasibility.csv

  calibrate_men:
    run: stata-mp:v1 analysis/men_calibration_weighting.do
    needs: [identify_dxa_eligible]
    outputs:
      highly_sensitive:
        patient_weights: output/dxa_eligible_men_calibration_weights.dta
      moderately_sensitive:
        balance: output/men_calibration_balance.csv
        weight_diagnostics: output/men_calibration_weight_diagnostics.csv
        missingness_exact: output/men_calibration_missingness.csv
        weighted_missingness_exact: output/men_calibration_weighted_missingness.csv
        feasibility: output/men_calibration_feasibility.csv

Job statistics

Status Count Percentage
Pending 0 0%
Running 0 0%
Succeeded 2 100%
Failed 0 0%

2 / 2 (100%) complete

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:35:29

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Succeeded
Backend
TPP
Workspace
nice001-simulation-cohort
Requested by
Xi Xiong
Branch
main
Force run dependencies
No
Git commit hash
a11e850
Requested actions
  • calibrate_women
  • calibrate_men

Code comparison

Compare the code used in this job request