Job request: 3156
- Organisation:
- DataLab
- Workspace:
- principle_trial_budesonide_inhalers_main
- ID:
- sm6ivtmp2sibiqel
This page shows the technical details of what happened when authorised researcher Jon Massey requested one or more actions to be run against real patient data in the project, within a secure environment.
By cross-referencing the indicated Requested Actions with the
Pipeline section below, you can infer what
security level
various outputs were written to. Outputs marked as
highly_sensitive
can never be viewed directly by a researcher; they can only
request that code runs against them. Outputs marked as
moderately_sensitive
can be viewed by an approved researcher by logging into a highly
secure environment. Only outputs marked as
moderately_sensitive
can be requested for release to the public, via a controlled
output review service.
Jobs
-
- Job identifier:
-
vy3sawvorcg3lo23
Pipeline
Show project.yaml
version: '3.0'
expectations:
population_size: 1000
actions:
generate_study_population:
run: cohortextractor:latest generate_cohort --study-definition study_definition
outputs:
highly_sensitive:
cohort: output/input.csv
generate_notebook:
run: jupyter:latest jupyter nbconvert /workspace/analysis/analysis.ipynb --execute --to html --output-dir=/workspace/output --ExecutePreprocessor.timeout=86400
needs: [generate_study_population]
outputs:
moderately_sensitive:
notebook: output/analysis.html
input_counts:
run: python:latest python analysis/input_counts.py
needs: [generate_study_population]
outputs:
moderately_sensitive:
cohort: output/inputcounts.txt
generate_study_population_all:
run: cohortextractor:latest generate_cohort --study-definition study_definition_exclusioncounts
outputs:
highly_sensitive:
cohort: output/input_exclusioncounts.csv
exclusion_counts:
run: python:latest python analysis/exclusion_counts.py
needs: [generate_study_population_all]
outputs:
moderately_sensitive:
cohort: output/exclusioncounts.txt
Timeline
-
Created:
-
Started:
-
Finished:
-
Runtime: 00:00:17
These timestamps are generated and stored using the UTC timezone on the TPP backend.
Job information
- Status
-
Succeeded
- Backend
- TPP
- Workspace
- principle_trial_budesonide_inhalers_main
- Requested by
- Jon Massey
- Branch
- main
- Force run dependencies
- No
- Git commit hash
- 88f5ede
- Requested actions
-
-
generate_notebook
-