Job request: 4416

View Repo View project.yaml

This page shows the technical details of what happened when authorised researcher Jenniferlyyip requested one or more actions to be run against real patient data in the Ethnic disparities in COVID-19 outcomes in London project, within a secure environment.

By cross-referencing the indicated Requested Actions with the Pipeline section below, you can infer what security level various outputs were written to. Outputs marked as highly_sensitive can never be viewed directly by a researcher; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

Pipeline

Show Hide project.yaml
version: '3.0'

expectations:
  population_size: 1000

actions:

  generate_study_population:
    run: cohortextractor:latest generate_cohort --study-definition study_definition
    outputs:
      highly_sensitive:
        cohort: output/input.csv

  descriptive_figures:
    run: r:latest analysis/report.R
    needs: [generate_study_population]
    outputs:
      moderately_sensitive:
        figure: output/descriptive.png
  
  descriptive_tables:
    run: r:latest analysis/full_table_script.R
    needs: [generate_study_population]
    outputs:
      moderately_sensitive:
        table_one: output/Table1.html
        table_one_one: output/Table1-1.html
        table_one_two: output/Table1-2.html
        table_one_three: output/Table1-3.html
        table_one_four: output/Table1-4.html
        table_one_five: output/Table1-5.html

State

State is inferred from the related Jobs.

Status: Failed

JobRequestError: descriptive_tables failed on a previous run and must be re-run

Timings

Timings set to UTC timezone.

  • Created:
  • Started:
  • Finished:
  • Runtime: 00:00:00

Config

  • Backend:
    TPP
  • Workspace:
    hest_os_study
  • Branch:
    main
  • Creator:
    Jenniferlyyip
  • Force run dependencies:
    False
  • Git Commit Hash:
    5c87215
  • Requested actions:
    • run_all