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Job request: 25885

Organisation:
Bennett Institute
Workspace:
raw_medicines_sdr
ID:
g6h2r774dzqlffo5
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Em Prestige requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    generate_dataset
    Status:
    Status: Succeeded
    Job identifier:
    utl4m6cudelxrqq6
  • Action:
    check_dataset
    Status:
    Status: Succeeded
    Job identifier:
    7okvdgzebijsbh44

Pipeline

Show project.yaml 
version: '5.0'

actions:
  generate_dataset:
    run: >
      ehrql:v1 generate-dataset
      analysis/dataset_definition.py 
      --test-data-file analysis/test_dataset_definition.py
      --dummy-tables dummy_tables
      --output output/dataset.arrow
    outputs:
      highly_sensitive:
        dataset: output/dataset.arrow

  check_dataset:
    run: r:v2 analysis/dataset_checks.R
    needs:
      - generate_dataset
    outputs:
      moderately_sensitive:
        checks: output/dataset_check.csv
        missing: output/dataset_missing.csv
        status: output/dataset_status.csv
  
  generate_measures:
    run: >
        ehrql:v1 generate-measures
        analysis/measures_definition.py
        --dummy-tables dummy_tables
        --output output/measures/:csv
    outputs:
      moderately_sensitive:
        dataset: output/measures/*.csv

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 01:35:50

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Succeeded
Backend
TPP
Workspace
raw_medicines_sdr
Requested by
Em Prestige
Branch
main
Force run dependencies
No
Git commit hash
f4cbd43
Requested actions
  • generate_dataset
  • check_dataset

Code comparison

Compare the code used in this job request