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Job request: 27442

Organisation:
University of Bristol
Workspace:
reduce-wp2
ID:
l5anetmmu2w5yock
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Charlotte James requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    generate_dataset_wp2_1
    Status:
    Failed
    Job identifier:
    jwyk6plgvhwfhgz7
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    diabetes_algo_wp2_1
    Status:
    Failed
    Job identifier:
    sanjerhpiww6dyoq
    Status message:
    cancelled_by_user: Cancelled by user

Pipeline

Show project.yaml 
version: '5.0'

actions:


  #WP2.1
  generate_dataset_wp2_1:
    run: ehrql:v1 generate-dataset analysis/dataset_definition/dataset_definition_wp2_1.py --output output/tmp_dataset_wp2_1.csv.gz
    outputs:
      highly_sensitive:
        dataset: output/tmp_dataset_wp2_1.csv.gz


  diabetes_algo_wp2_1:
    run: diabetes-algo:v0.0.6 --output output/dataset_wp2_1.csv.gz
    config:
      df_input: tmp_dataset_wp2_1.csv.gz
      birth_date: dob
      ethnicity_cat: ethnicity_cat
      df_output: dataset_wp2_1.csv.gz
    needs:
      - generate_dataset_wp2_1
    outputs:
      highly_sensitive:
        dataset: output/dataset_wp2_1.csv.gz

  #WP2.2
  generate_dataset_wp2_2:
    run: ehrql:v1 generate-dataset analysis/dataset_definition/dataset_definition_wp2_2.py --output output/tmp_dataset_wp2_2.csv.gz
    outputs:
      highly_sensitive:
        dataset: output/tmp_dataset_wp2_2.csv.gz


  diabetes_algo_wp2_2:
    run: diabetes-algo:v0.0.6 --output output/dataset_wp2_2.csv.gz
    config:
      df_input: tmp_dataset_wp2_2.csv.gz
      birth_date: dob
      ethnicity_cat: ethnicity_cat
      df_output: dataset_wp2_2.csv.gz
    needs:
      - generate_dataset_wp2_2
    outputs:
      highly_sensitive:
        dataset: output/dataset_wp2_2.csv.gz

Job statistics

Status Count Percentage
Pending 0 0%
Running 0 0%
Succeeded 0 0%
Failed 2 100%

2 / 2 (100%) complete

Timeline

  • Created:

  • Finished:

  • Runtime:

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
reduce-wp2
Requested by
Charlotte James
Branch
main
Force run dependencies
No
Git commit hash
301a487
Requested actions
  • generate_dataset_wp2_1
  • diabetes_algo_wp2_1

Code comparison

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