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Job request: 1733

Organisation:
Royal Devon & Exeter NHS Foundation Trust and University of Exeter
Workspace:
sro-gastro-cut-down
ID:
zkbc2knjn42efoen
View repo View project.yaml

This page shows the technical details of what happened when authorised researcher Nick Kennedy requested one or more actions to be run against real patient data in the project, within a secure environment.

By cross-referencing the indicated Requested Actions with the Pipeline section below, you can infer what security level various outputs were written to. Outputs marked as highly_sensitive can never be viewed directly by a researcher; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

Jobs

Pipeline

Show project.yaml 
version: '3.0'

expectations:
  population_size: 1000

actions:

  generate_study_population:
    run: cohortextractor:latest generate_cohort --study-definition study_definition
    outputs:
      highly_sensitive:
        cohort: output/input.csv

  run_model:
    run: r:latest analysis/model.R
    needs: [generate_study_population]
    outputs:
      moderately_sensitive:
        count_by_stp: output/qfit_by_stp.csv
        qfit_summary: output/summary_qfit_values.csv

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:02:57

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job information

Status
Failed
Backend
TPP
Workspace
sro-gastro-cut-down
Requested by
Nick Kennedy
Branch
main
Force run dependencies
No
Git commit hash
34ed783
Requested actions
  • generate_study_population
  • run_model
  • run_all

Code comparison

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