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Job request: 8096

Organisation:
The London School of Hygiene & Tropical Medicine
Workspace:
os-sch-children-2022
ID:
bbefjnd3w722oih7
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Tom Cowling requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    generate_cohort
    Status:
    Succeeded
    Job identifier:
    5wgkcnzrivee3wgn
  • Action:
    01_cr_analysis_dataset
    Status:
    Succeeded
    Job identifier:
    gu2yxso3sbn5xa73
  • Action:
    10_an_interaction_cox_models_vaccine_covid_death_main
    Status:
    Failed
    Job identifier:
    yf2ghijl2mmfqylt
    Error:
    Internal error: this usually means a platform issue rather than a problem for users to fix. The tech team are automatically notified of these errors and will be investigating.
  • Action:
    03a_an_descriptive_tables
    Status:
    Succeeded
    Job identifier:
    nymjjepuxz3rtzf7
  • Action:
    02_an_data_checks
    Status:
    Succeeded
    Job identifier:
    cyikgzrmuxvzjbs2
  • Action:
    03b_an_descriptive_table_1
    Status:
    Succeeded
    Job identifier:
    boolnzuyiw3qjply
  • Action:
    04a_an_descriptive_tables
    Status:
    Succeeded
    Job identifier:
    dctfifql4koxy7pi
  • Action:
    04b_an_descriptive_table_2
    Status:
    Succeeded
    Job identifier:
    3ds2fqbzwzs4tc27
  • Action:
    03c_an_descriptive_table_1
    Status:
    Succeeded
    Job identifier:
    gkke47cl3egqel5o
  • Action:
    10c_an_interaction_cox_models_vaccine_child_prevacc_covid_tpp_prob
    Status:
    Succeeded
    Job identifier:
    cvzw33ixtak5j7t4
  • Action:
    07b_an_multivariable_cox_models_FULL_covidadmission
    Status:
    Failed
    Job identifier:
    xnyuqvdc7ehdblvi
    Error:
    nonzero_exit: Job exited with error code 137: Killed: out of memory, or stopped by admin
  • Action:
    10c_an_interaction_cox_models_vaccine_child_prevacc_covidadmission
    Status:
    Succeeded
    Job identifier:
    aexlg56htze4mqos
  • Action:
    10_an_interaction_cox_models_vaccine_covidadmission_main
    Status:
    Succeeded
    Job identifier:
    5sqmx266l3qwiljw
  • Action:
    07b_an_multivariable_cox_models_FULL_covid_death
    Status:
    Failed
    Job identifier:
    2z4qezv7oyzootbw
    Error:
    nonzero_exit: Job exited with error code 137: Killed: out of memory, or stopped by admin
  • Action:
    07b_an_multivariable_cox_models_FULL_covid_test_ever
    Status:
    Succeeded
    Job identifier:
    ehciygucacieox5c
  • Action:
    10_an_interaction_cox_models_vaccine_covid_tpp_prob_main
    Status:
    Succeeded
    Job identifier:
    x4dsnbevqov6qfyl
  • Action:
    10d_an_interaction_cox_models_vaccine_child_postvacc_covid_tpp_prob
    Status:
    Succeeded
    Job identifier:
    d3q3zgiam5kncnf3
  • Action:
    11_an_interaction_HR_tables_forest_vaccine_main_analysis_covidadmission
    Status:
    Succeeded
    Job identifier:
    n2mee4zal4v54wdj
  • Action:
    06_univariate_analysis
    Status:
    Succeeded
    Job identifier:
    ciewzfpx7t2z72hj
  • Action:
    10c_an_interaction_cox_models_vaccine_child_prevacc_covid_death
    Status:
    Succeeded
    Job identifier:
    abbvvf4vctswzcox
  • Action:
    11c_an_interaction_HR_tables_forest_vaccine_child_prevacc_covidadmission
    Status:
    Succeeded
    Job identifier:
    aqamut6q7q5afsge
  • Action:
    11_an_interaction_HR_tables_forest_vaccine_main_analysis_covid_tpp_prob
    Status:
    Succeeded
    Job identifier:
    z7k5mmxvnth4l3oc
  • Action:
    07a_an_multivariable_cox_models_demogADJ
    Status:
    Succeeded
    Job identifier:
    7pkh3ybdarh73qtn
  • Action:
    07b_an_multivariable_cox_models_FULL_covid_tpp_prob
    Status:
    Succeeded
    Job identifier:
    oaev4talkdjag4aa
  • Action:
    11c_an_interaction_HR_tables_forest_vaccine_child_prevacc_covid_death
    Status:
    Succeeded
    Job identifier:
    r4tfvje6rax4bg7m
  • Action:
    11d_an_interaction_HR_tables_forest_vaccine_child_postvacc_covidadmission
    Status:
    Failed
    Job identifier:
    p6fbkaiswt5thxzd
    Error:
    Internal error: this usually means a platform issue rather than a problem for users to fix. The tech team are automatically notified of these errors and will be investigating.
  • Action:
    08_an_tablecontent_HRtable_covid_tpp_prob
    Status:
    Failed
    Job identifier:
    oxvwbremmh3inges
    Error:
    Internal error: this usually means a platform issue rather than a problem for users to fix. The tech team are automatically notified of these errors and will be investigating.
  • Action:
    08_an_tablecontent_HRtable_covid_death
    Status:
    Failed
    Job identifier:
    uqsuzvbrw6vvf3tf
    Error:
    Internal error: this usually means a platform issue rather than a problem for users to fix. The tech team are automatically notified of these errors and will be investigating.
  • Action:
    08_an_tablecontent_HRtable_covidadmission
    Status:
    Failed
    Job identifier:
    rvx2dcflmlxcmivb
    Error:
    Internal error: this usually means a platform issue rather than a problem for users to fix. The tech team are automatically notified of these errors and will be investigating.
  • Action:
    11_an_interaction_HR_tables_forest_vaccine_main_analysis_covid_death
    Status:
    Failed
    Job identifier:
    wgmqbnqnnhcdjtkv
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    15_anHRfigure_all_outcomes_2021
    Status:
    Failed
    Job identifier:
    3eebkp2fknueclkc
    Error:
    Internal error: this usually means a platform issue rather than a problem for users to fix. The tech team are automatically notified of these errors and will be investigating.
  • Action:
    10d_an_interaction_cox_models_vaccine_child_postvacc_covidadmission
    Status:
    Failed
    Job identifier:
    4ryarldhoblaanou
    Error:
    nonzero_exit: Job exited with error code 137: Killed: out of memory, or stopped by admin
  • Action:
    10d_an_interaction_cox_models_vaccine_child_postvacc_covid_death
    Status:
    Failed
    Job identifier:
    cga5zfvgxnb4bpjl
    Error:
    nonzero_exit: Job exited with error code 137: Killed: out of memory, or stopped by admin
  • Action:
    11c_an_interaction_HR_tables_forest_vaccine_child_prevacc_covid_tpp_prob
    Status:
    Failed
    Job identifier:
    ijr4bn5oh475hjlm
    Error:
    Internal error: this usually means a platform issue rather than a problem for users to fix. The tech team are automatically notified of these errors and will be investigating.
  • Action:
    11d_an_interaction_HR_tables_forest_vaccine_child_postvacc_covid_death
    Status:
    Failed
    Job identifier:
    2e6bu3z3drds5mkq
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    11d_an_interaction_HR_tables_forest_vaccine_child_postvacc_covid_tpp_prob
    Status:
    Failed
    Job identifier:
    tjohe6jdcnhrc5eq
    Error:
    Internal error: this usually means a platform issue rather than a problem for users to fix. The tech team are automatically notified of these errors and will be investigating.

Pipeline

Show project.yaml
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Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 260:02:29

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
os-sch-children-2022
Requested by
Tom Cowling
Branch
main
Force run dependencies
No
Git commit hash
4bfd099
Requested actions
  • generate_cohort
  • 01_cr_analysis_dataset
  • 02_an_data_checks
  • 03a_an_descriptive_tables
  • 03b_an_descriptive_table_1
  • 03c_an_descriptive_table_1
  • 04a_an_descriptive_tables
  • 04b_an_descriptive_table_2
  • 06_univariate_analysis
  • 07a_an_multivariable_cox_models_demogADJ
  • 07b_an_multivariable_cox_models_FULL_covid_death
  • 07b_an_multivariable_cox_models_FULL_covid_tpp_prob
  • 07b_an_multivariable_cox_models_FULL_covidadmission
  • 07b_an_multivariable_cox_models_FULL_covid_test_ever
  • 08_an_tablecontent_HRtable_covid_tpp_prob
  • 08_an_tablecontent_HRtable_covid_death
  • 08_an_tablecontent_HRtable_covidadmission
  • 10_an_interaction_cox_models_vaccine_covid_tpp_prob_main
  • 10_an_interaction_cox_models_vaccine_covidadmission_main
  • 10_an_interaction_cox_models_vaccine_covid_death_main
  • 10c_an_interaction_cox_models_vaccine_child_prevacc_covid_tpp_prob
  • 10c_an_interaction_cox_models_vaccine_child_prevacc_covidadmission
  • 10c_an_interaction_cox_models_vaccine_child_prevacc_covid_death
  • 10d_an_interaction_cox_models_vaccine_child_postvacc_covid_tpp_prob
  • 10d_an_interaction_cox_models_vaccine_child_postvacc_covidadmission
  • 10d_an_interaction_cox_models_vaccine_child_postvacc_covid_death
  • 15_anHRfigure_all_outcomes_2021
  • 11_an_interaction_HR_tables_forest_vaccine_main_analysis_covid_tpp_prob
  • 11_an_interaction_HR_tables_forest_vaccine_main_analysis_covidadmission
  • 11_an_interaction_HR_tables_forest_vaccine_main_analysis_covid_death
  • 11c_an_interaction_HR_tables_forest_vaccine_child_prevacc_covid_tpp_prob
  • 11c_an_interaction_HR_tables_forest_vaccine_child_prevacc_covidadmission
  • 11c_an_interaction_HR_tables_forest_vaccine_child_prevacc_covid_death
  • 11d_an_interaction_HR_tables_forest_vaccine_child_postvacc_covid_tpp_prob
  • 11d_an_interaction_HR_tables_forest_vaccine_child_postvacc_covidadmission
  • 11d_an_interaction_HR_tables_forest_vaccine_child_postvacc_covid_death

Code comparison

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